| SRR4457252 | 2nd_leaf | DAH12 | 6.25 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 6.10 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 7.90 | HC |
| SRR4457261 | 2nd_leaf | DAH36 | 8.12 | HC |
| SRR4457263 | 2nd_leaf | DAH36 | 10.89 | HC |
| SRR4457264 | 2nd_leaf | DAH44 | 8.14 | HC |
| SRR4457265 | 2nd_leaf | DAH44 | 11.90 | HC |
| SRR3745126 | anther | wt | 5.55 | HC |
| SRR358795 | callus | wt | 17.90 | HC |
| SRR358796 | callus | wt | 13.61 | HC |
| SRR358797 | callus | wt | 16.55 | HC |
| SRR358798 | callus | wt | 17.05 | HC |
| SRR5560727 | caryopsis | wild_type | 25.74 | HC |
| SRR5560728 | caryopsis | wild_type | 19.24 | HC |
| SRR5560729 | caryopsis | wild_type | 18.86 | HC |
| SRR7265403 | coleoptile | 2dN | 6.23 | HC |
| SRR7265404 | coleoptile | 2dN | 10.82 | HC |
| SRR7265405 | coleoptile | 2dN | 4.99 | HC |
| SRR7265407 | coleoptile | 3dA | 4.88 | HC |
| SRR7265408 | coleoptile | 3dA | 3.54 | HC |
| SRR7265411 | coleoptile | 3dN | 6.53 | HC |
| SRR7265412 | coleoptile | 4dA | 9.42 | HC |
| SRR7265414 | coleoptile | 4dA | 10.21 | HC |
| SRR7265415 | coleoptile | 4dN | 8.26 | HC |
| SRR7265416 | coleoptile | 4dN | 8.00 | HC |
| SRR7265417 | coleoptile | 4dN | 9.07 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 6.65 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 5.95 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 6.20 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 9.36 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 9.86 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 5.17 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 8.06 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 6.65 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 7.18 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 4.94 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 6.77 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 4.93 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 6.71 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 7.13 | HC |
| SRR7265373 | embryo | dry seed 0 h | 12.70 | HC |
| SRR7265374 | embryo | dry seed 0 h | 15.72 | HC |
| SRR7265376 | embryo | 1hA | 4.13 | HC |
| SRR7265377 | embryo | 1hA | 16.09 | HC |
| SRR7265378 | embryo | 1hA | 14.38 | HC |
| SRR7265379 | embryo | 1hN | 12.40 | HC |
| SRR7265380 | embryo | 1hN | 12.42 | HC |
| SRR7265381 | embryo | 1hN | 11.73 | HC |
| SRR7265382 | embryo | 3hA | 8.08 | HC |
| SRR7265383 | embryo | 3hA | 14.98 | HC |
| SRR7265384 | embryo | 3hA | 12.67 | HC |
| SRR7265385 | embryo | 3hN | 6.13 | HC |
| SRR7265386 | embryo | 3hN | 6.09 | HC |
| SRR7265387 | embryo | 3hN | 13.26 | HC |
| SRR7265388 | embryo | 12hA | 5.43 | HC |
| SRR7265389 | embryo | 12hA | 13.21 | HC |
| SRR7265390 | embryo | 12hA | 13.03 | HC |
| SRR7265392 | embryo | 12hN | 13.14 | HC |
| SRR7265393 | embryo | 12hN | 13.17 | HC |
| SRR7265394 | embryo | 24hA | 10.05 | HC |
| SRR7265395 | embryo | 24hA | 10.56 | HC |
| SRR7265397 | embryo | 24hN | 6.47 | HC |
| SRR7265398 | embryo | 24hN | 6.10 | HC |
| SRR7265399 | embryo | 24hN | 10.26 | HC |
| SRR2338867 | endosprem | control | 2.25 | HC |
| SRR2338868 | endosprem | high_temperature | 3.11 | HC |
| SRR4457231 | flag_leaf | DAH4 | 4.71 | HC |
| SRR4457233 | flag_leaf | DAH4 | 3.97 | HC |
| SRR4457242 | flag_leaf | DAH28 | 3.90 | HC |
| SRR4457243 | flag_leaf | DAH36 | 5.27 | HC |
| SRR1213690 | flower | wt(flower buds) | 8.64 | HC |
| SRR1213691 | flower | wt | 9.44 | HC |
| SRR8060835 | leaf | wild_type | 5.13 | HC |
| SRR8060836 | leaf | wild_type | 3.90 | HC |
| SRR8060837 | leaf | wild_type | 5.38 | HC |
| SRR8240824 | leaf | wild_type | 3.67 | HC |
| SRR8240825 | leaf | wild_type | 3.82 | HC |
| SRR8240826 | leaf | wild_type | 3.01 | HC |
| SRR8240818 | leaf | wild_type | 2.53 | HC |
| SRR8240819 | leaf | wild_type | 3.76 | HC |
| SRR8240820 | leaf | wild_type | 2.89 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 4.56 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 10.38 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 8.04 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 6.98 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 13.64 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 10.04 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 8.45 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 7.09 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 8.96 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 8.95 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 8.78 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 10.47 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 10.29 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 9.74 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 8.17 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 8.53 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 10.22 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 9.63 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 12.82 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 9.63 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 12.82 | HC |
| SRR1761530 | leaf | control | 9.63 | HC |
| SRR1761531 | leaf | control | 12.82 | HC |
| SRR504365 | leaf | wt | 9.76 | HC |
| SRR6417969 | leaf | H2O_control | 3.66 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 4.77 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 3.72 | HC |
| SRR8611900 | leaf | Non-inoculated | 14.98 | HC |
| SRR8611901 | leaf | Non-inoculated | 14.50 | HC |
| SRR8611902 | leaf | Non-inoculated | 16.17 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 11.97 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 10.06 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 10.46 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 6.91 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 7.13 | HC |
| SRR1213692 | leaf | wt | 8.81 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 6.41 | HC |
| SRR5856933 | leaf | control | 2.74 | HC |
| SRR5856934 | leaf | control | 2.71 | HC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 9.15 | HC |
| SRR6168973 | leaf | none (control) | 11.95 | HC |
| SRR6168974 | leaf | none (control) | 11.38 | HC |
| SRR6168975 | leaf | none (control) | 13.80 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 18.95 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 15.40 | HC |
| SRR6168980 | leaf | none (control) | 2.06 | HC |
| SRR6168981 | leaf | none (control) | 3.54 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 4.26 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 3.27 | HC |
| SRR8582888 | panicle | AM | 4.15 | HC |
| SRR8582889 | panicle | AM | 2.25 | HC |
| SRR8582890 | panicle | AM | 3.74 | HC |
| SRR8582891 | panicle | PM | 7.99 | HC |
| SRR8582892 | panicle | PM | 15.06 | HC |
| SRR8582893 | panicle | PM | 11.63 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 4.21 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 17.81 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 4.32 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 4.55 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 7.79 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 22.16 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 24.70 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 4.90 | HC |
| SRR5126153 | root | "mock,7_days" | 4.61 | HC |
| SRR5126155 | root | "mock,7_days" | 7.54 | HC |
| SRR5126157 | root | "mock,7_days" | 6.62 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 7.69 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 7.76 | HC |
| SRR5126165 | root | "mock,14_days" | 7.64 | HC |
| SRR5126167 | root | "mock,14_days" | 4.52 | HC |
| SRR5126169 | root | "mock,14_days" | 8.87 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 7.10 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 7.04 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 10.31 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 6.09 | HC |
| SRR4947480 | root | control | 5.56 | HC |
| SRR4947491 | root | Al | 6.98 | HC |
| SRR4947498 | root | Al | 7.60 | HC |
| SRR4947501 | root | Al | 9.26 | HC |
| SRR4947502 | root | control | 5.78 | HC |
| SRR6502093 | root | 100 mM NaCl | 5.99 | HC |
| SRR6502103 | root | 100 mM NaCl | 7.29 | HC |
| SRR6502105 | root | 100 mM NaCl | 8.04 | HC |
| SRR1740432 | root_elongation_zone | wt | 4.22 | HC |
| SRR1740433 | root_elongation_zone | wt | 4.30 | HC |
| SRR1740430 | root_meristematic_zone | wt | 7.80 | HC |
| SRR6441554 | seedling | wild_type | 6.46 | HC |
| SRR6441555 | seedling | wild_type | 5.18 | HC |
| SRR2154084 | seedling | wt | 4.74 | HC |
| SRR2154085 | seedling | wt | 5.89 | HC |
| SRR3098741 | seedling | wt | 3.74 | HC |
| SRR3098742 | seedling | wt | 3.39 | HC |
| SRR3098743 | seedling | wt | 3.06 | HC |
| SRR1944583 | seedling | no_treatment | 5.93 | HC |
| SRR358791 | seedling | wt | 8.28 | HC |
| SRR358792 | seedling | wt | 7.83 | HC |
| SRR358793 | seedling | wt | 9.71 | HC |
| SRR358794 | seedling | wt | 11.57 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 6.26 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 10.13 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 17.26 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 13.02 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 12.99 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.19 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 9.72 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 14.27 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 6.51 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 7.04 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 6.04 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 5.81 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 7.80 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 5.47 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 6.15 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 7.12 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 6.09 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 6.65 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 5.96 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 5.65 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 7.53 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 35.62 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 35.49 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 33.75 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 47.79 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 45.39 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 41.82 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 31.44 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 28.07 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 32.31 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 35.91 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 34.37 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 41.20 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 32.91 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 33.28 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 9.44 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 34.07 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 37.85 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 36.60 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 36.78 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 16.79 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 11.20 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 20.24 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 9.64 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 10.82 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 8.21 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 18.23 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 20.02 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 16.37 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 22.56 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 24.16 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 25.10 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 15.27 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 14.32 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 13.66 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 4.74 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 6.19 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 3.89 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 5.10 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 5.39 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 3.60 | HC |