| SRR358795 | callus | wt | 10.05 | HC |
| SRR358796 | callus | wt | 10.38 | HC |
| SRR358798 | callus | wt | 9.43 | HC |
| SRR6320473 | carpel | wt | 19.43 | HC |
| SRR6320498 | carpel | wt | 18.45 | HC |
| SRR7265412 | coleoptile | 4dA | 7.37 | HC |
| SRR7265413 | coleoptile | 4dA | 13.11 | HC |
| SRR7265414 | coleoptile | 4dA | 6.95 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 5.65 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 14.73 | HC |
| SRR7265373 | embryo | dry seed 0 h | 14.00 | HC |
| SRR7265374 | embryo | dry seed 0 h | 12.89 | HC |
| SRR7265375 | embryo | dry seed 0 h | 3.04 | HC |
| SRR7265376 | embryo | 1hA | 21.08 | HC |
| SRR7265377 | embryo | 1hA | 22.88 | HC |
| SRR7265378 | embryo | 1hA | 23.90 | HC |
| SRR7265379 | embryo | 1hN | 12.06 | HC |
| SRR7265380 | embryo | 1hN | 14.71 | HC |
| SRR7265381 | embryo | 1hN | 13.73 | HC |
| SRR7265382 | embryo | 3hA | 211.24 | HC |
| SRR7265383 | embryo | 3hA | 147.17 | HC |
| SRR7265384 | embryo | 3hA | 174.72 | HC |
| SRR7265385 | embryo | 3hN | 58.58 | HC |
| SRR7265386 | embryo | 3hN | 44.10 | HC |
| SRR7265387 | embryo | 3hN | 47.47 | HC |
| SRR7265391 | embryo | 12hN | 20.87 | HC |
| SRR7265392 | embryo | 12hN | 17.76 | HC |
| SRR7265393 | embryo | 12hN | 19.80 | HC |
| SRR7265398 | embryo | 24hN | 6.27 | HC |
| SRR2338866 | endosprem | control | 6.07 | HC |
| SRR2338867 | endosprem | control | 5.47 | HC |
| SRR4457240 | flag_leaf | DAH28 | 5.99 | HC |
| SRR4457241 | flag_leaf | DAH28 | 4.31 | HC |
| SRR4457248 | flag_leaf | DAH44 | 7.38 | HC |
| SRR1213690 | flower | wt(flower buds) | 4.13 | HC |
| SRR8240824 | leaf | wild_type | 8.48 | HC |
| SRR8240825 | leaf | wild_type | 5.19 | HC |
| SRR8240826 | leaf | wild_type | 8.60 | HC |
| SRR8240818 | leaf | wild_type | 6.05 | HC |
| SRR8240819 | leaf | wild_type | 8.25 | HC |
| SRR8240820 | leaf | wild_type | 7.77 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 6.78 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 28.49 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 20.74 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 57.45 | HC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 40.98 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 40.70 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 25.38 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 40.76 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 30.01 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 11.42 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 29.61 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 25.93 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 43.70 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 28.81 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 52.97 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 18.68 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 101.67 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 17.54 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 23.95 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 44.40 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 26.49 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.01 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 42.45 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 38.94 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 101.12 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 85.25 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 40.55 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 14.39 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 108.15 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 21.34 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 66.40 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 42.47 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 6.05 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 36.74 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 72.97 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 36.78 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 72.96 | HC |
| SRR1761528 | leaf | drought | 36.89 | HC |
| SRR1761529 | leaf | drought | 72.96 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 136.14 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 160.92 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 148.36 | HC |
| SRR6417967 | leaf | H2O_control | 6.21 | HC |
| SRR6417968 | leaf | H2O_control | 8.95 | HC |
| SRR6417969 | leaf | H2O_control | 4.01 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 11.90 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 8.80 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 35.24 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 27.24 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 15.61 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 21.40 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 30.07 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 32.53 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 27.40 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 17.54 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 20.38 | HC |
| SRR8611900 | leaf | Non-inoculated | 5.05 | HC |
| SRR8611901 | leaf | Non-inoculated | 5.57 | HC |
| SRR8611902 | leaf | Non-inoculated | 5.40 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 36.79 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 35.67 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 34.68 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 7.06 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 7.30 | HC |
| SRR1213692 | leaf | wt | 4.75 | HC |
| SRR1213693 | leaf | wt | 6.97 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 20.04 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 12.63 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 10.61 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 5.51 | HC |
| SRR5856930 | leaf | salt | 3.54 | HC |
| SRR5856931 | leaf | salt | 4.97 | HC |
| SRR5856932 | leaf | salt | 4.87 | HC |
| SRR5856935 | leaf | control | 2.56 | HC |
| SRR5856936 | leaf | salt | 6.05 | HC |
| SRR5856937 | leaf | salt | 6.56 | HC |
| SRR5856938 | leaf | salt | 5.60 | HC |
| SRR6053396 | leaf | gibberellic acid (GA) | 7.90 | HC |
| SRR6168973 | leaf | none (control) | 8.94 | HC |
| SRR6168974 | leaf | none (control) | 24.63 | HC |
| SRR6168975 | leaf | none (control) | 93.00 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 206.37 | HC |
| SRR6168979 | leaf | none (control) | 78.12 | HC |
| SRR6168980 | leaf | none (control) | 95.44 | HC |
| SRR6168981 | leaf | none (control) | 20.30 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 25.24 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 29.52 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 18.89 | HC |
| SRR5126147 | root | "mock,1_day" | 15.66 | HC |
| SRR5126148 | root | "mock,1_day" | 11.05 | HC |
| SRR5126149 | root | "mock,1_day" | 8.96 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 23.63 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 17.39 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 13.49 | HC |
| SRR5126153 | root | "mock,7_days" | 4.96 | HC |
| SRR5126155 | root | "mock,7_days" | 8.74 | HC |
| SRR5126157 | root | "mock,7_days" | 20.60 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 12.83 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 35.28 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 11.71 | HC |
| SRR5126165 | root | "mock,14_days" | 22.82 | HC |
| SRR5126167 | root | "mock,14_days" | 19.75 | HC |
| SRR5126169 | root | "mock,14_days" | 5.74 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 7.89 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 9.77 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 12.64 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 8.15 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 8.71 | HC |
| SRR1213695 | root | wt | 3.76 | HC |
| SRR4947485 | root | Al | 5.97 | HC |
| SRR2154086 | seedling | wt | 4.75 | HC |
| SRR2154082 | seedling | wt | 3.88 | HC |
| SRR2154084 | seedling | wt | 3.96 | HC |
| SRR2154085 | seedling | wt | 5.55 | HC |
| SRR2154087 | seedling | wt | 13.10 | HC |
| SRR3098741 | seedling | wt | 17.72 | HC |
| SRR3098743 | seedling | wt | 10.14 | HC |
| SRR2857719 | seedling | drought_stress_0h | 6.20 | HC |
| SRR2857720 | seedling | drought_stress_1h | 9.85 | HC |
| SRR2857721 | seedling | drought_stress_6h | 50.19 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 69.76 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 5.57 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 5.69 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 10.97 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.60 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 7.60 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.72 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.95 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 33.04 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 30.53 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 22.97 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 13.81 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 10.08 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 10.75 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 11.11 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 8.91 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 7.26 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 12.28 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 5.79 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 4.62 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 4.68 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 6.29 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 16.46 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 18.93 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 14.48 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 17.33 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 3.93 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 4.48 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.24 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.29 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 102.47 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 126.06 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 283.25 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 308.68 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 4.67 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 7.57 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 5.11 | HC |