| SRR358796 | callus | wt | 10.15 | HC |
| SRR358797 | callus | wt | 12.29 | HC |
| SRR358798 | callus | wt | 11.64 | HC |
| SRR6320473 | carpel | wt | 8.97 | HC |
| SRR6320498 | carpel | wt | 9.62 | HC |
| SRR5560727 | caryopsis | wild_type | 11.51 | HC |
| SRR5560728 | caryopsis | wild_type | 14.21 | HC |
| SRR5560729 | caryopsis | wild_type | 14.16 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 5.20 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 6.51 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 4.34 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 4.16 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 6.52 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 5.46 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 7.05 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 7.08 | HC |
| SRR7265373 | embryo | dry seed 0 h | 6.14 | HC |
| SRR7265374 | embryo | dry seed 0 h | 5.47 | HC |
| SRR7265378 | embryo | 1hA | 3.68 | HC |
| SRR7265379 | embryo | 1hN | 4.59 | HC |
| SRR7265380 | embryo | 1hN | 4.35 | HC |
| SRR7265381 | embryo | 1hN | 3.85 | HC |
| SRR7265384 | embryo | 3hA | 4.31 | HC |
| SRR2338866 | endosprem | control | 12.00 | HC |
| SRR2338867 | endosprem | control | 3.90 | HC |
| SRR2338868 | endosprem | high_temperature | 6.37 | HC |
| SRR2338869 | endosprem | high_temperature | 8.16 | HC |
| SRR1213690 | flower | wt(flower buds) | 11.68 | HC |
| SRR1213691 | flower | wt | 12.85 | HC |
| SRR8060835 | leaf | wild_type | 3.70 | HC |
| SRR8060836 | leaf | wild_type | 4.02 | HC |
| SRR8060837 | leaf | wild_type | 4.23 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 4.34 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 5.31 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 4.39 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 5.13 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 6.75 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.88 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.39 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 10.69 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 7.34 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 8.79 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 8.77 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 7.25 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 11.22 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 8.00 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 10.13 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 8.02 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 7.50 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 8.55 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 7.54 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 6.95 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 6.74 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 8.44 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.82 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 7.82 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 10.38 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 11.11 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 10.50 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 7.65 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 7.90 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 10.36 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 7.79 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 8.43 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 8.68 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 9.14 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 6.38 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 9.25 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 8.19 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 7.33 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 7.92 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 6.73 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 7.09 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 7.33 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 7.92 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 6.73 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 7.09 | HC |
| SRR1761528 | leaf | drought | 7.33 | HC |
| SRR1761529 | leaf | drought | 7.93 | HC |
| SRR1761530 | leaf | control | 6.73 | HC |
| SRR1761531 | leaf | control | 7.09 | HC |
| SRR504365 | leaf | wt | 13.01 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.29 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.33 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.55 | HC |
| SRR6417967 | leaf | H2O_control | 4.09 | HC |
| SRR6417968 | leaf | H2O_control | 5.09 | HC |
| SRR6417969 | leaf | H2O_control | 3.85 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 3.62 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 3.77 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 8.81 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 7.63 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 3.79 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 5.43 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 6.21 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 7.23 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 5.62 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 9.80 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 3.77 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 7.50 | HC |
| SRR8611900 | leaf | Non-inoculated | 4.70 | HC |
| SRR8611901 | leaf | Non-inoculated | 4.53 | HC |
| SRR8611902 | leaf | Non-inoculated | 4.67 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 4.78 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 4.56 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 5.38 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 5.21 | HC |
| SRR1213692 | leaf | wt | 7.12 | HC |
| SRR1213693 | leaf | wt | 11.72 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 5.48 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 5.81 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 5.02 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 5.91 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 6.43 | HC |
| SRR5856928 | leaf | control | 2.76 | HC |
| SRR5856929 | leaf | control | 2.44 | HC |
| SRR5856930 | leaf | salt | 2.00 | HC |
| SRR5856931 | leaf | salt | 2.72 | HC |
| SRR5856932 | leaf | salt | 2.00 | HC |
| SRR5856933 | leaf | control | 3.90 | HC |
| SRR5856934 | leaf | control | 3.12 | HC |
| SRR5856935 | leaf | control | 3.04 | HC |
| SRR5856936 | leaf | salt | 2.59 | HC |
| SRR5856937 | leaf | salt | 2.01 | HC |
| SRR5856938 | leaf | salt | 2.20 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 8.78 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 3.08 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 6.81 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 3.23 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.84 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 3.44 | HC |
| SRR8582888 | panicle | AM | 6.47 | HC |
| SRR8582889 | panicle | AM | 2.32 | HC |
| SRR8582890 | panicle | AM | 4.16 | HC |
| SRR8582891 | panicle | PM | 7.62 | HC |
| SRR8582892 | panicle | PM | 13.88 | HC |
| SRR8582893 | panicle | PM | 5.56 | HC |
| SRR4947496 | root | control | 6.21 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 7.16 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 5.30 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 4.80 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 6.01 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 7.33 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 6.57 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 14.12 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 11.48 | HC |
| SRR5126147 | root | "mock,1_day" | 6.46 | HC |
| SRR5126148 | root | "mock,1_day" | 5.36 | HC |
| SRR5126149 | root | "mock,1_day" | 6.69 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 6.89 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 7.82 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 6.02 | HC |
| SRR5126153 | root | "mock,7_days" | 7.56 | HC |
| SRR5126155 | root | "mock,7_days" | 8.31 | HC |
| SRR5126157 | root | "mock,7_days" | 9.76 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 8.97 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 7.04 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 7.76 | HC |
| SRR5126165 | root | "mock,14_days" | 7.10 | HC |
| SRR5126167 | root | "mock,14_days" | 5.92 | HC |
| SRR5126169 | root | "mock,14_days" | 8.90 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 7.71 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 7.76 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 10.78 | HC |
| SRR1213694 | root | wt | 8.26 | HC |
| SRR1213695 | root | wt | 12.11 | HC |
| SRR4947480 | root | control | 6.75 | HC |
| SRR4947481 | root | control | 10.83 | HC |
| SRR4947484 | root | Al | 8.98 | HC |
| SRR4947485 | root | Al | 6.20 | HC |
| SRR4947488 | root | control | 5.97 | HC |
| SRR4947489 | root | control | 5.30 | HC |
| SRR4947492 | root | Al | 8.64 | HC |
| SRR4947493 | root | Al | 7.38 | HC |
| SRR4947497 | root | control | 11.90 | HC |
| SRR4947500 | root | Al | 7.67 | HC |
| SRR4947501 | root | Al | 12.84 | HC |
| SRR4947504 | root | control | 9.28 | HC |
| SRR4947505 | root | control | 10.88 | HC |
| SRR4947508 | root | Al | 6.85 | HC |
| SRR4947509 | root | Al | 6.83 | HC |
| SRR6502091 | root | 100 mM NaCl | 7.91 | HC |
| SRR6502092 | root | 100 mM NaCl | 6.49 | HC |
| SRR6502093 | root | 100 mM NaCl | 9.34 | HC |
| SRR6502103 | root | 100 mM NaCl | 7.13 | HC |
| SRR6502104 | root | 100 mM NaCl | 8.01 | HC |
| SRR6502105 | root | 100 mM NaCl | 7.71 | HC |
| SRR6502106 | root | control | 5.47 | HC |
| SRR6502107 | root | control | 4.86 | HC |
| SRR6502108 | root | control | 5.05 | HC |
| SRR1740436 | root_differentiation_zone | wt | 5.18 | HC |
| SRR1740432 | root_elongation_zone | wt | 4.78 | HC |
| SRR1740433 | root_elongation_zone | wt | 5.22 | HC |
| SRR1740430 | root_meristematic_zone | wt | 3.63 | HC |
| SRR6441554 | seedling | wild_type | 3.41 | HC |
| SRR6441555 | seedling | wild_type | 3.75 | HC |
| SRR2154086 | seedling | wt | 9.67 | HC |
| SRR2154082 | seedling | wt | 10.51 | HC |
| SRR2154083 | seedling | wt | 7.96 | HC |
| SRR2154085 | seedling | wt | 10.98 | HC |
| SRR3098741 | seedling | wt | 4.60 | HC |
| SRR3098742 | seedling | wt | 4.05 | HC |
| SRR2857719 | seedling | drought_stress_0h | 5.27 | HC |
| SRR358793 | seedling | wt | 8.33 | HC |
| SRR358794 | seedling | wt | 7.54 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 3.47 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 6.37 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 5.73 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 7.60 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 6.59 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 6.04 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 4.12 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 6.57 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 6.89 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 7.98 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 5.81 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 4.58 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 4.19 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.20 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.76 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.44 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.01 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.82 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 5.36 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 9.31 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 15.47 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 8.77 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 8.89 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 11.73 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 7.46 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 8.89 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 9.78 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 7.85 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 11.93 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 12.50 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 12.68 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 10.54 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 13.43 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 13.56 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 9.17 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 10.75 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 14.12 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 11.82 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 12.03 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 11.13 | HC |