| SRR3745125 | anther | wt | 10.63 | HC |
| SRR3745126 | anther | wt | 8.51 | HC |
| SRR3745127 | anther | wt | 8.79 | HC |
| SRR358795 | callus | wt | 14.01 | HC |
| SRR358796 | callus | wt | 22.69 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 5.38 | HC |
| SRR4947495 | root | control | 7.81 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 5.02 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 5.71 | HC |
| SRR2338866 | endosprem | control | 5.99 | HC |
| SRR2338868 | endosprem | high_temperature | 3.18 | HC |
| SRR1213691 | flower | wt | 6.79 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.92 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.60 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.75 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 6.34 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.06 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 6.55 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.15 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 6.29 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 5.26 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 4.44 | HC |
| SRR8582891 | panicle | PM | 6.03 | HC |
| SRR8582893 | panicle | PM | 5.58 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 3.44 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 5.60 | HC |
| SRR5126147 | root | "mock,1_day" | 7.31 | HC |
| SRR5126148 | root | "mock,1_day" | 10.92 | HC |
| SRR5126149 | root | "mock,1_day" | 9.43 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 9.96 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 16.32 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 12.10 | HC |
| SRR5126153 | root | "mock,7_days" | 4.65 | HC |
| SRR5126155 | root | "mock,7_days" | 10.37 | HC |
| SRR5126157 | root | "mock,7_days" | 11.10 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 12.84 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 10.84 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 25.04 | HC |
| SRR5126165 | root | "mock,14_days" | 10.55 | HC |
| SRR5126167 | root | "mock,14_days" | 9.43 | HC |
| SRR5126169 | root | "mock,14_days" | 11.62 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 5.73 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 11.08 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 11.95 | HC |
| SRR4947479 | root | control | 4.57 | HC |
| SRR4947483 | root | Al | 4.73 | HC |
| SRR4947491 | root | Al | 7.54 | HC |
| SRR4947498 | root | Al | 5.91 | HC |
| SRR4947499 | root | Al | 5.76 | HC |
| SRR4947503 | root | control | 5.65 | HC |
| SRR4947507 | root | Al | 11.40 | HC |
| SRR6502105 | root | 100 mM NaCl | 5.09 | HC |
| SRR1740434 | root_differentiation_zone | wt | 6.53 | HC |
| SRR1740435 | root_differentiation_zone | wt | 7.07 | HC |
| SRR1740436 | root_differentiation_zone | wt | 8.58 | HC |
| SRR1740431 | root_elongation_zone | wt | 12.05 | HC |
| SRR1740432 | root_elongation_zone | wt | 27.35 | HC |
| SRR1740433 | root_elongation_zone | wt | 16.56 | HC |
| SRR1740428 | root_meristematic_zone | wt | 20.68 | HC |
| SRR1740429 | root_meristematic_zone | wt | 31.98 | HC |
| SRR1740430 | root_meristematic_zone | wt | 30.70 | HC |
| SRR2154086 | seedling | wt | 8.73 | HC |
| SRR2154084 | seedling | wt | 5.92 | HC |
| SRR2857719 | seedling | drought_stress_0h | 9.48 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 4.26 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 8.32 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.75 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.72 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 4.47 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.69 | HC |