| SRR358795 | callus | wt | 18.35 | HC |
| SRR358796 | callus | wt | 13.85 | HC |
| SRR358797 | callus | wt | 14.66 | HC |
| SRR358798 | callus | wt | 14.59 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 6.46 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 7.17 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 4.28 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 5.69 | HC |
| SRR7265400 | coleoptile | 2dA | 6.32 | HC |
| SRR7265401 | coleoptile | 2dA | 5.37 | HC |
| SRR7265402 | coleoptile | 2dA | 6.26 | HC |
| SRR7265403 | coleoptile | 2dN | 9.31 | HC |
| SRR7265404 | coleoptile | 2dN | 9.27 | HC |
| SRR7265405 | coleoptile | 2dN | 8.37 | HC |
| SRR7265407 | coleoptile | 3dA | 3.32 | HC |
| SRR7265409 | coleoptile | 3dN | 8.03 | HC |
| SRR7265410 | coleoptile | 3dN | 6.37 | HC |
| SRR7265411 | coleoptile | 3dN | 6.24 | HC |
| SRR7265413 | coleoptile | 4dA | 6.17 | HC |
| SRR7265415 | coleoptile | 4dN | 7.72 | HC |
| SRR7265416 | coleoptile | 4dN | 7.60 | HC |
| SRR7265417 | coleoptile | 4dN | 7.00 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 6.21 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 4.53 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 5.97 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 8.77 | HC |
| SRR7265373 | embryo | dry seed 0 h | 12.59 | HC |
| SRR7265374 | embryo | dry seed 0 h | 13.79 | HC |
| SRR7265375 | embryo | dry seed 0 h | 3.93 | HC |
| SRR7265376 | embryo | 1hA | 11.05 | HC |
| SRR7265377 | embryo | 1hA | 13.12 | HC |
| SRR7265378 | embryo | 1hA | 11.87 | HC |
| SRR7265379 | embryo | 1hN | 12.27 | HC |
| SRR7265380 | embryo | 1hN | 12.55 | HC |
| SRR7265381 | embryo | 1hN | 12.77 | HC |
| SRR7265382 | embryo | 3hA | 19.97 | HC |
| SRR7265383 | embryo | 3hA | 19.05 | HC |
| SRR7265384 | embryo | 3hA | 19.70 | HC |
| SRR7265385 | embryo | 3hN | 10.47 | HC |
| SRR7265386 | embryo | 3hN | 9.63 | HC |
| SRR7265387 | embryo | 3hN | 9.69 | HC |
| SRR7265388 | embryo | 12hA | 12.26 | HC |
| SRR7265389 | embryo | 12hA | 13.23 | HC |
| SRR7265390 | embryo | 12hA | 12.13 | HC |
| SRR7265391 | embryo | 12hN | 15.24 | HC |
| SRR7265392 | embryo | 12hN | 14.28 | HC |
| SRR7265393 | embryo | 12hN | 16.13 | HC |
| SRR7265394 | embryo | 24hA | 10.14 | HC |
| SRR7265395 | embryo | 24hA | 10.06 | HC |
| SRR7265396 | embryo | 24hA | 8.98 | HC |
| SRR7265397 | embryo | 24hN | 11.81 | HC |
| SRR7265398 | embryo | 24hN | 11.84 | HC |
| SRR7265399 | embryo | 24hN | 10.05 | HC |
| SRR2338869 | endosprem | high_temperature | 3.44 | HC |
| SRR1213690 | flower | wt(flower buds) | 7.76 | HC |
| SRR1213691 | flower | wt | 4.68 | HC |
| SRR8240826 | leaf | wild_type | 2.70 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 4.48 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 4.50 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 6.24 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 15.56 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 9.14 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 14.76 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 11.34 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 11.91 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 12.99 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 11.70 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 12.17 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 17.64 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 11.75 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 12.88 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 16.07 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 10.83 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 10.60 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 11.50 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 8.86 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 7.40 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 10.88 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 9.60 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 11.43 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 13.34 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 12.14 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 13.32 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 13.39 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 10.67 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 9.90 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 8.97 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 15.30 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 13.11 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 13.91 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 9.72 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 9.98 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 12.44 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 14.43 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 17.73 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 6.90 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 8.10 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 10.94 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 14.14 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 6.90 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 8.10 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 10.94 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 14.14 | HC |
| SRR1761528 | leaf | drought | 6.90 | HC |
| SRR1761529 | leaf | drought | 8.10 | HC |
| SRR1761530 | leaf | control | 10.94 | HC |
| SRR1761531 | leaf | control | 14.14 | HC |
| SRR504365 | leaf | wt | 7.83 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 6.50 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.20 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 7.43 | HC |
| SRR6417967 | leaf | H2O_control | 7.02 | HC |
| SRR6417968 | leaf | H2O_control | 6.07 | HC |
| SRR6417969 | leaf | H2O_control | 6.91 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 6.26 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 6.54 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 5.80 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 5.47 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 6.82 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 6.19 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 6.51 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 5.15 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 5.97 | HC |
| SRR8611900 | leaf | Non-inoculated | 6.84 | HC |
| SRR8611901 | leaf | Non-inoculated | 7.29 | HC |
| SRR8611902 | leaf | Non-inoculated | 7.20 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 5.31 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 5.49 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 5.55 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 7.08 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 7.61 | HC |
| SRR1213692 | leaf | wt | 8.22 | HC |
| SRR1213693 | leaf | wt | 7.74 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 13.82 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 11.72 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 13.17 | HC |
| SRR6502088 | leaf | control | 12.69 | HC |
| SRR6502089 | leaf | control | 12.61 | HC |
| SRR6502090 | leaf | control | 13.28 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 16.67 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 17.27 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 10.19 | HC |
| SRR6502100 | leaf | control | 12.02 | HC |
| SRR6502101 | leaf | control | 11.66 | HC |
| SRR6502102 | leaf | control | 9.69 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 7.65 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 8.76 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 3.01 | HC |
| SRR8582888 | panicle | AM | 3.53 | HC |
| SRR8582890 | panicle | AM | 3.00 | HC |
| SRR8582891 | panicle | PM | 10.60 | HC |
| SRR8582892 | panicle | PM | 16.05 | HC |
| SRR8582893 | panicle | PM | 11.43 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 3.09 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 3.90 | HC |
| SRR5126147 | root | "mock,1_day" | 5.73 | HC |
| SRR5126148 | root | "mock,1_day" | 5.99 | HC |
| SRR5126149 | root | "mock,1_day" | 7.44 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 8.84 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 8.65 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 7.10 | HC |
| SRR5126153 | root | "mock,7_days" | 5.16 | HC |
| SRR5126155 | root | "mock,7_days" | 6.15 | HC |
| SRR5126157 | root | "mock,7_days" | 7.94 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 6.86 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 7.38 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 6.49 | HC |
| SRR5126165 | root | "mock,14_days" | 5.30 | HC |
| SRR5126169 | root | "mock,14_days" | 5.76 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 6.94 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 8.04 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 9.02 | HC |
| SRR1213695 | root | wt | 6.02 | HC |
| SRR4947480 | root | control | 6.04 | HC |
| SRR4947481 | root | control | 8.26 | HC |
| SRR4947484 | root | Al | 6.79 | HC |
| SRR4947485 | root | Al | 5.17 | HC |
| SRR4947488 | root | control | 5.93 | HC |
| SRR4947489 | root | control | 7.14 | HC |
| SRR4947492 | root | Al | 7.56 | HC |
| SRR4947493 | root | Al | 5.46 | HC |
| SRR4947497 | root | control | 7.87 | HC |
| SRR4947500 | root | Al | 6.18 | HC |
| SRR4947501 | root | Al | 11.18 | HC |
| SRR4947504 | root | control | 5.90 | HC |
| SRR4947505 | root | control | 7.07 | HC |
| SRR4947508 | root | Al | 5.79 | HC |
| SRR6502091 | root | 100 mM NaCl | 13.96 | HC |
| SRR6502092 | root | 100 mM NaCl | 13.83 | HC |
| SRR6502093 | root | 100 mM NaCl | 14.43 | HC |
| SRR6502094 | root | control | 8.28 | HC |
| SRR6502095 | root | control | 9.94 | HC |
| SRR6502096 | root | control | 7.80 | HC |
| SRR6502103 | root | 100 mM NaCl | 11.90 | HC |
| SRR6502104 | root | 100 mM NaCl | 12.24 | HC |
| SRR6502105 | root | 100 mM NaCl | 12.65 | HC |
| SRR6502106 | root | control | 8.66 | HC |
| SRR6502107 | root | control | 7.81 | HC |
| SRR6502108 | root | control | 9.99 | HC |
| SRR1740435 | root_differentiation_zone | wt | 2.91 | HC |
| SRR1740436 | root_differentiation_zone | wt | 5.39 | HC |
| SRR1740432 | root_elongation_zone | wt | 6.36 | HC |
| SRR1740433 | root_elongation_zone | wt | 5.65 | HC |
| SRR1740428 | root_meristematic_zone | wt | 8.06 | HC |
| SRR1740429 | root_meristematic_zone | wt | 9.40 | HC |
| SRR1740430 | root_meristematic_zone | wt | 13.26 | HC |
| SRR6441554 | seedling | wild_type | 4.44 | HC |
| SRR2154086 | seedling | wt | 5.65 | HC |
| SRR2154083 | seedling | wt | 4.16 | HC |
| SRR2154085 | seedling | wt | 5.14 | HC |
| SRR2154087 | seedling | wt | 7.81 | HC |
| SRR3098741 | seedling | wt | 6.12 | HC |
| SRR3098742 | seedling | wt | 10.54 | HC |
| SRR3098743 | seedling | wt | 4.87 | HC |
| SRR1944583 | seedling | no_treatment | 5.42 | HC |
| SRR358791 | seedling | wt | 13.26 | HC |
| SRR358792 | seedling | wt | 10.03 | HC |
| SRR358793 | seedling | wt | 9.81 | HC |
| SRR358794 | seedling | wt | 9.93 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 5.09 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 5.83 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 15.60 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.35 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 8.69 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 6.71 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 7.06 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 8.30 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 4.41 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 4.72 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 4.38 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 4.99 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 5.93 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 5.75 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 4.61 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 5.06 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 5.66 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 6.44 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 7.03 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 8.85 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 9.83 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 5.67 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 7.53 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 3.55 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 3.79 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.12 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.18 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.35 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.55 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 6.70 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 6.87 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 8.40 | HC |