| SRR4457249 | 2nd_leaf | DAH4 | 14.72 | HC |
| SRR4457250 | 2nd_leaf | DAH4 | 11.21 | HC |
| SRR4457251 | 2nd_leaf | DAH4 | 13.81 | HC |
| SRR4457261 | 2nd_leaf | DAH36 | 6.58 | HC |
| SRR5560727 | caryopsis | wild_type | 28.46 | HC |
| SRR5560728 | caryopsis | wild_type | 24.90 | HC |
| SRR5560729 | caryopsis | wild_type | 18.18 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 6.16 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 9.51 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 8.33 | HC |
| SRR7265401 | coleoptile | 2dA | 4.05 | HC |
| SRR7265404 | coleoptile | 2dN | 4.85 | HC |
| SRR7265405 | coleoptile | 2dN | 4.65 | HC |
| SRR7265406 | coleoptile | 3dA | 4.62 | HC |
| SRR7265407 | coleoptile | 3dA | 3.45 | HC |
| SRR7265408 | coleoptile | 3dA | 4.00 | HC |
| SRR7265410 | coleoptile | 3dN | 4.45 | HC |
| SRR7265411 | coleoptile | 3dN | 4.14 | HC |
| SRR7265412 | coleoptile | 4dA | 8.50 | HC |
| SRR7265413 | coleoptile | 4dA | 13.01 | HC |
| SRR7265414 | coleoptile | 4dA | 9.49 | HC |
| SRR7265415 | coleoptile | 4dN | 5.87 | HC |
| SRR7265417 | coleoptile | 4dN | 4.61 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 5.40 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 5.41 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 5.19 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 14.15 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 10.74 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 16.02 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 16.16 | HC |
| SRR7265388 | embryo | 12hA | 5.73 | HC |
| SRR7265389 | embryo | 12hA | 6.49 | HC |
| SRR7265390 | embryo | 12hA | 7.44 | HC |
| SRR7265391 | embryo | 12hN | 7.81 | HC |
| SRR7265392 | embryo | 12hN | 7.17 | HC |
| SRR7265393 | embryo | 12hN | 8.17 | HC |
| SRR7265394 | embryo | 24hA | 6.75 | HC |
| SRR7265395 | embryo | 24hA | 6.54 | HC |
| SRR7265396 | embryo | 24hA | 6.15 | HC |
| SRR7265397 | embryo | 24hN | 5.67 | HC |
| SRR7265398 | embryo | 24hN | 5.24 | HC |
| SRR2338869 | endosprem | high_temperature | 4.73 | HC |
| SRR976168 | flag_leaf | wild_type | 4.20 | HC |
| SRR4457231 | flag_leaf | DAH4 | 7.74 | HC |
| SRR4457232 | flag_leaf | DAH4 | 7.90 | HC |
| SRR4457233 | flag_leaf | DAH4 | 8.30 | HC |
| SRR4457243 | flag_leaf | DAH36 | 4.41 | HC |
| SRR4457244 | flag_leaf | DAH36 | 4.15 | HC |
| SRR1213690 | flower | wt(flower buds) | 4.55 | HC |
| SRR1213691 | flower | wt | 5.55 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 8.55 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.79 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 13.07 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 7.93 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 5.04 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.76 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.40 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 11.69 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 10.49 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.71 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 11.44 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 6.31 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 8.94 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 5.72 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 13.37 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 9.65 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 5.94 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 13.34 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 9.65 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 5.97 | HC |
| SRR1761528 | leaf | drought | 13.42 | HC |
| SRR1761529 | leaf | drought | 9.65 | HC |
| SRR1761531 | leaf | control | 5.94 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.66 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.56 | HC |
| SRR6417967 | leaf | H2O_control | 7.27 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 13.17 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 16.38 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 12.81 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 16.52 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 13.53 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 10.19 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 6.33 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 5.28 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 6.11 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 6.30 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 5.90 | HC |
| SRR1213693 | leaf | wt | 5.01 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 5.35 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 6.99 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 6.47 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 6.10 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 5.41 | HC |
| SRR6168973 | leaf | none (control) | 6.71 | HC |
| SRR6168975 | leaf | none (control) | 8.22 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 24.03 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 33.50 | HC |
| SRR6168981 | leaf | none (control) | 6.80 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 11.66 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 11.35 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 10.05 | HC |
| SRR8582889 | panicle | AM | 1.93 | HC |
| SRR8582890 | panicle | AM | 5.28 | HC |
| SRR8582891 | panicle | PM | 23.56 | HC |
| SRR8582892 | panicle | PM | 30.76 | HC |
| SRR8582893 | panicle | PM | 21.98 | HC |
| SRR4947496 | root | control | 12.96 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 5.28 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 6.97 | HC |
| SRR5126147 | root | "mock,1_day" | 14.46 | HC |
| SRR5126148 | root | "mock,1_day" | 9.51 | HC |
| SRR5126149 | root | "mock,1_day" | 13.71 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 12.35 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 11.07 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 11.49 | HC |
| SRR5126153 | root | "mock,7_days" | 7.37 | HC |
| SRR5126155 | root | "mock,7_days" | 8.18 | HC |
| SRR5126157 | root | "mock,7_days" | 32.22 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 5.52 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 9.82 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 9.90 | HC |
| SRR5126165 | root | "mock,14_days" | 5.63 | HC |
| SRR5126167 | root | "mock,14_days" | 7.87 | HC |
| SRR5126169 | root | "mock,14_days" | 9.56 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 10.47 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 10.50 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 12.26 | HC |
| SRR1213694 | root | wt | 4.15 | HC |
| SRR1213695 | root | wt | 5.19 | HC |
| SRR4947480 | root | control | 11.69 | HC |
| SRR4947481 | root | control | 19.38 | HC |
| SRR4947484 | root | Al | 8.04 | HC |
| SRR4947485 | root | Al | 13.25 | HC |
| SRR4947488 | root | control | 11.89 | HC |
| SRR4947489 | root | control | 16.06 | HC |
| SRR4947492 | root | Al | 13.90 | HC |
| SRR4947493 | root | Al | 11.94 | HC |
| SRR4947497 | root | control | 27.52 | HC |
| SRR4947500 | root | Al | 16.49 | HC |
| SRR4947501 | root | Al | 22.79 | HC |
| SRR4947504 | root | control | 20.72 | HC |
| SRR4947505 | root | control | 22.41 | HC |
| SRR4947508 | root | Al | 12.16 | HC |
| SRR4947509 | root | Al | 12.91 | HC |
| SRR6502091 | root | 100 mM NaCl | 10.50 | HC |
| SRR6502092 | root | 100 mM NaCl | 14.29 | HC |
| SRR6502093 | root | 100 mM NaCl | 16.92 | HC |
| SRR6502094 | root | control | 7.88 | HC |
| SRR6502095 | root | control | 8.93 | HC |
| SRR6502096 | root | control | 7.81 | HC |
| SRR6502103 | root | 100 mM NaCl | 13.22 | HC |
| SRR6502104 | root | 100 mM NaCl | 12.52 | HC |
| SRR6502105 | root | 100 mM NaCl | 13.39 | HC |
| SRR6502106 | root | control | 7.29 | HC |
| SRR6502107 | root | control | 7.90 | HC |
| SRR6502108 | root | control | 7.88 | HC |
| SRR1740436 | root_differentiation_zone | wt | 4.12 | HC |
| SRR1740432 | root_elongation_zone | wt | 3.95 | HC |
| SRR1740433 | root_elongation_zone | wt | 3.97 | HC |
| SRR2154086 | seedling | wt | 9.11 | HC |
| SRR2154085 | seedling | wt | 14.70 | HC |
| SRR2154087 | seedling | wt | 8.80 | HC |
| SRR3098741 | seedling | wt | 6.63 | HC |
| SRR3098742 | seedling | wt | 4.20 | HC |
| SRR3098743 | seedling | wt | 6.25 | HC |
| SRR2857719 | seedling | drought_stress_0h | 6.85 | HC |
| SRR2857721 | seedling | drought_stress_6h | 8.34 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.11 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 12.53 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 11.57 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 10.98 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 8.04 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 7.87 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 9.42 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 10.64 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 10.83 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 8.41 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 10.88 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 10.30 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 10.21 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 10.26 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 10.10 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 10.48 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 15.41 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 9.40 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 7.82 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 6.37 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 7.58 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 5.70 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 7.35 | HC |