| SRR5560729 | caryopsis | wild_type | 5.59 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 4.35 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 26.65 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 20.73 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 43.08 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 36.82 | HC |
| SRR1213690 | flower | wt(flower buds) | 5.87 | HC |
| SRR1213691 | flower | wt | 19.80 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 6.52 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 4.93 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 4.51 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 6.31 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 8.25 | HC |
| SRR8611900 | leaf | Non-inoculated | 5.09 | HC |
| SRR8611901 | leaf | Non-inoculated | 5.10 | HC |
| SRR8611902 | leaf | Non-inoculated | 4.37 | HC |
| SRR5126147 | root | "mock,1_day" | 19.11 | HC |
| SRR5126148 | root | "mock,1_day" | 19.88 | HC |
| SRR5126149 | root | "mock,1_day" | 14.73 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 14.06 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 10.02 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 11.91 | HC |
| SRR5126153 | root | "mock,7_days" | 17.37 | HC |
| SRR5126155 | root | "mock,7_days" | 12.68 | HC |
| SRR5126157 | root | "mock,7_days" | 7.08 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 6.32 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 9.00 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 10.28 | HC |
| SRR5126165 | root | "mock,14_days" | 10.42 | HC |
| SRR5126167 | root | "mock,14_days" | 10.98 | HC |
| SRR5126169 | root | "mock,14_days" | 15.88 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 5.88 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 9.85 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 8.30 | HC |
| SRR1213694 | root | wt | 8.61 | HC |
| SRR6441554 | seedling | wild_type | 9.77 | HC |
| SRR6441555 | seedling | wild_type | 6.92 | HC |
| SRR2154086 | seedling | wt | 6.68 | HC |
| SRR2154085 | seedling | wt | 6.96 | HC |
| SRR2154087 | seedling | wt | 5.18 | HC |
| SRR1944583 | seedling | no_treatment | 4.62 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 4.69 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.71 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 11.43 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 5.24 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.55 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.98 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.91 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 5.05 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 4.76 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 4.77 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 3.58 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.96 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.45 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 4.34 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.85 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 4.19 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 5.37 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 6.78 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 6.08 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 7.89 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 7.34 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 10.09 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 11.65 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 12.07 | HC |