| SRR3745125 | anther | wt | 8.90 | HC |
| SRR3745126 | anther | wt | 11.03 | HC |
| SRR3745127 | anther | wt | 11.74 | HC |
| SRR5560727 | caryopsis | wild_type | 12.73 | HC |
| SRR5560728 | caryopsis | wild_type | 20.04 | HC |
| SRR5560729 | caryopsis | wild_type | 26.41 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 17.59 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 16.34 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 6.87 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 14.44 | HC |
| SRR7265400 | coleoptile | 2dA | 5.86 | HC |
| SRR7265401 | coleoptile | 2dA | 4.23 | HC |
| SRR7265402 | coleoptile | 2dA | 6.13 | HC |
| SRR7265403 | coleoptile | 2dN | 5.30 | HC |
| SRR7265404 | coleoptile | 2dN | 6.39 | HC |
| SRR7265405 | coleoptile | 2dN | 5.31 | HC |
| SRR7265406 | coleoptile | 3dA | 4.60 | HC |
| SRR7265407 | coleoptile | 3dA | 3.75 | HC |
| SRR7265409 | coleoptile | 3dN | 6.70 | HC |
| SRR7265410 | coleoptile | 3dN | 5.25 | HC |
| SRR7265411 | coleoptile | 3dN | 6.18 | HC |
| SRR7265414 | coleoptile | 4dA | 4.92 | HC |
| SRR7265415 | coleoptile | 4dN | 7.06 | HC |
| SRR7265416 | coleoptile | 4dN | 6.30 | HC |
| SRR7265417 | coleoptile | 4dN | 7.09 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 4.71 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 5.12 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 12.69 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 11.53 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 19.01 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 13.16 | HC |
| SRR7265388 | embryo | 12hA | 10.63 | HC |
| SRR7265389 | embryo | 12hA | 7.44 | HC |
| SRR7265390 | embryo | 12hA | 7.78 | HC |
| SRR7265391 | embryo | 12hN | 8.85 | HC |
| SRR7265392 | embryo | 12hN | 6.06 | HC |
| SRR7265393 | embryo | 12hN | 6.72 | HC |
| SRR7265394 | embryo | 24hA | 5.35 | HC |
| SRR7265396 | embryo | 24hA | 5.36 | HC |
| SRR7265397 | embryo | 24hN | 6.00 | HC |
| SRR7265398 | embryo | 24hN | 6.86 | HC |
| SRR7265399 | embryo | 24hN | 6.96 | HC |
| SRR2338869 | endosprem | high_temperature | 4.25 | HC |
| SRR1213690 | flower | wt(flower buds) | 8.79 | HC |
| SRR1213691 | flower | wt | 12.80 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 8.96 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 6.64 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 6.20 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 7.89 | HC |
| SRR8611900 | leaf | Non-inoculated | 5.04 | HC |
| SRR8611901 | leaf | Non-inoculated | 4.06 | HC |
| SRR8611902 | leaf | Non-inoculated | 4.71 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 7.35 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 8.41 | HC |
| SRR6168973 | leaf | none (control) | 11.37 | HC |
| SRR6168974 | leaf | none (control) | 14.35 | HC |
| SRR6168975 | leaf | none (control) | 7.80 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 9.32 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 11.56 | HC |
| SRR4947496 | root | control | 22.06 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 5.08 | HC |
| SRR1633182 | panicle | WT | 17.43 | HC |
| SRR1633185 | panicle | WT | 24.29 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 3.50 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 3.80 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 5.21 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 5.30 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 16.13 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 14.83 | HC |
| SRR5126147 | root | "mock,1_day" | 19.94 | HC |
| SRR5126148 | root | "mock,1_day" | 15.43 | HC |
| SRR5126149 | root | "mock,1_day" | 21.73 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 24.74 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 18.48 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 13.10 | HC |
| SRR5126153 | root | "mock,7_days" | 16.35 | HC |
| SRR5126155 | root | "mock,7_days" | 15.41 | HC |
| SRR5126157 | root | "mock,7_days" | 22.46 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 8.81 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 11.99 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 13.25 | HC |
| SRR5126165 | root | "mock,14_days" | 17.01 | HC |
| SRR5126167 | root | "mock,14_days" | 9.05 | HC |
| SRR5126169 | root | "mock,14_days" | 18.94 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 10.06 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 15.77 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 12.90 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 3.79 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 4.76 | HC |
| SRR1213694 | root | wt | 5.73 | HC |
| SRR4947480 | root | control | 27.33 | HC |
| SRR4947481 | root | control | 33.19 | HC |
| SRR4947484 | root | Al | 24.96 | HC |
| SRR4947485 | root | Al | 23.35 | HC |
| SRR4947488 | root | control | 21.34 | HC |
| SRR4947489 | root | control | 24.95 | HC |
| SRR4947492 | root | Al | 28.01 | HC |
| SRR4947493 | root | Al | 20.29 | HC |
| SRR4947497 | root | control | 19.23 | HC |
| SRR4947500 | root | Al | 25.68 | HC |
| SRR4947501 | root | Al | 25.73 | HC |
| SRR4947504 | root | control | 27.51 | HC |
| SRR4947505 | root | control | 28.61 | HC |
| SRR4947508 | root | Al | 20.33 | HC |
| SRR4947509 | root | Al | 21.41 | HC |
| SRR6502091 | root | 100 mM NaCl | 24.18 | HC |
| SRR6502092 | root | 100 mM NaCl | 29.19 | HC |
| SRR6502093 | root | 100 mM NaCl | 28.36 | HC |
| SRR6502094 | root | control | 17.04 | HC |
| SRR6502095 | root | control | 14.02 | HC |
| SRR6502096 | root | control | 14.64 | HC |
| SRR6502103 | root | 100 mM NaCl | 25.31 | HC |
| SRR6502104 | root | 100 mM NaCl | 25.16 | HC |
| SRR6502105 | root | 100 mM NaCl | 31.42 | HC |
| SRR6502106 | root | control | 17.83 | HC |
| SRR6502107 | root | control | 14.58 | HC |
| SRR6502108 | root | control | 16.69 | HC |
| SRR1740434 | root_differentiation_zone | wt | 6.24 | HC |
| SRR1740435 | root_differentiation_zone | wt | 12.52 | HC |
| SRR1740436 | root_differentiation_zone | wt | 14.87 | HC |
| SRR1740431 | root_elongation_zone | wt | 8.12 | HC |
| SRR1740432 | root_elongation_zone | wt | 14.87 | HC |
| SRR1740433 | root_elongation_zone | wt | 13.18 | HC |
| SRR1740428 | root_meristematic_zone | wt | 5.80 | HC |
| SRR1740429 | root_meristematic_zone | wt | 5.22 | HC |
| SRR1740430 | root_meristematic_zone | wt | 5.09 | HC |
| SRR6441554 | seedling | wild_type | 3.83 | HC |
| SRR6441555 | seedling | wild_type | 3.27 | HC |
| SRR2154086 | seedling | wt | 8.52 | HC |
| SRR2154083 | seedling | wt | 6.08 | HC |
| SRR2154084 | seedling | wt | 7.09 | HC |
| SRR2154085 | seedling | wt | 9.02 | HC |
| SRR2154087 | seedling | wt | 7.69 | HC |
| SRR3098741 | seedling | wt | 3.33 | HC |
| SRR3098742 | seedling | wt | 2.91 | HC |
| SRR3098743 | seedling | wt | 2.78 | HC |
| SRR2857719 | seedling | drought_stress_0h | 11.64 | HC |
| SRR2857720 | seedling | drought_stress_1h | 6.51 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 4.11 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 6.17 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 6.38 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 9.68 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 15.29 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.97 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 7.35 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 7.02 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.17 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 5.67 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.70 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 8.78 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 8.16 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 11.65 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 9.75 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 11.49 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 12.96 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 11.82 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 10.57 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 10.69 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 10.74 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 10.84 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 6.59 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 6.01 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 4.70 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 8.14 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 6.35 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 10.67 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 6.90 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 9.41 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 8.38 | HC |