| SRR4457252 | 2nd_leaf | DAH12 | 4.50 | HC |
| SRR4457254 | 2nd_leaf | DAH12 | 3.95 | HC |
| SRR4457255 | 2nd_leaf | DAH20 | 5.20 | HC |
| SRR4457256 | 2nd_leaf | DAH20 | 4.90 | HC |
| SRR4457257 | 2nd_leaf | DAH20 | 5.59 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 4.37 | HC |
| SRR4457259 | 2nd_leaf | DAH28 | 4.95 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 5.21 | HC |
| SRR4457261 | 2nd_leaf | DAH36 | 7.95 | HC |
| SRR4457262 | 2nd_leaf | DAH36 | 8.54 | HC |
| SRR4457263 | 2nd_leaf | DAH36 | 7.30 | HC |
| SRR4457264 | 2nd_leaf | DAH44 | 7.11 | HC |
| SRR4457265 | 2nd_leaf | DAH44 | 10.93 | HC |
| SRR4457266 | 2nd_leaf | DAH44 | 6.97 | HC |
| SRR358795 | callus | wt | 13.26 | HC |
| SRR358796 | callus | wt | 15.28 | HC |
| SRR358797 | callus | wt | 10.63 | HC |
| SRR358798 | callus | wt | 12.47 | HC |
| SRR5560727 | caryopsis | wild_type | 19.04 | HC |
| SRR5560728 | caryopsis | wild_type | 18.51 | HC |
| SRR5560729 | caryopsis | wild_type | 12.42 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 35.20 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 13.92 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 29.21 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 18.13 | HC |
| SRR2338867 | endosprem | control | 3.48 | HC |
| SRR2338868 | endosprem | high_temperature | 4.87 | HC |
| SRR2338869 | endosprem | high_temperature | 4.71 | HC |
| SRR4457235 | flag_leaf | DAH12 | 4.07 | HC |
| SRR4457237 | flag_leaf | DAH20 | 3.09 | HC |
| SRR4457238 | flag_leaf | DAH20 | 4.30 | HC |
| SRR4457239 | flag_leaf | DAH20 | 4.65 | HC |
| SRR4457244 | flag_leaf | DAH36 | 4.23 | HC |
| SRR4457245 | flag_leaf | DAH36 | 5.29 | HC |
| SRR504365 | leaf | wt | 6.36 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 12.30 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 10.27 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 7.50 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 5.96 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 10.71 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 8.95 | HC |
| SRR8611900 | leaf | Non-inoculated | 7.87 | HC |
| SRR8611901 | leaf | Non-inoculated | 6.42 | HC |
| SRR8611902 | leaf | Non-inoculated | 7.67 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 10.29 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 9.38 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 8.04 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 4.71 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 5.94 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 5.75 | HC |
| SRR5856927 | leaf | control | 18.55 | HC |
| SRR5856928 | leaf | control | 17.30 | HC |
| SRR5856929 | leaf | control | 17.58 | HC |
| SRR5856930 | leaf | salt | 9.43 | HC |
| SRR5856931 | leaf | salt | 9.84 | HC |
| SRR5856932 | leaf | salt | 7.71 | HC |
| SRR5856933 | leaf | control | 17.41 | HC |
| SRR5856934 | leaf | control | 12.09 | HC |
| SRR5856935 | leaf | control | 14.44 | HC |
| SRR5856936 | leaf | salt | 8.88 | HC |
| SRR5856937 | leaf | salt | 7.04 | HC |
| SRR5856938 | leaf | salt | 8.00 | HC |
| SRR6168973 | leaf | none (control) | 7.50 | HC |
| SRR6168974 | leaf | none (control) | 5.75 | HC |
| SRR6168975 | leaf | none (control) | 11.95 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 15.33 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 6.85 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 8.98 | HC |
| SRR6168979 | leaf | none (control) | 5.01 | HC |
| SRR6168980 | leaf | none (control) | 4.14 | HC |
| SRR6168981 | leaf | none (control) | 4.65 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 12.23 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 5.69 | HC |
| SRR8582889 | panicle | AM | 2.72 | HC |
| SRR5110429 | panicle | Dawn | 6.59 | HC |
| SRR5110430 | panicle | Dawn | 6.79 | HC |
| SRR5110431 | panicle | Dawn | 5.33 | HC |
| SRR5110432 | panicle | Dawn | 5.73 | HC |
| SRR4947496 | root | control | 19.86 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 5.42 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 3.41 | HC |
| SRR5110439 | panicle | Dawn + 7h | 5.95 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 5.20 | HC |
| SRR5110446 | panicle | Dusk | 5.80 | HC |
| SRR5110447 | panicle | Dusk | 6.11 | HC |
| SRR5110450 | panicle | Dawn + 14h | 7.07 | HC |
| SRR5110451 | panicle | Dawn + 14h | 8.29 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 10.12 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 9.08 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 9.79 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 7.35 | HC |
| SRR5110458 | panicle | Dawn + 21h | 6.21 | HC |
| SRR5110459 | panicle | Dawn + 21h | 6.51 | HC |
| SRR5110460 | panicle | Dawn + 21h | 5.77 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 4.13 | HC |
| SRR1633182 | panicle | WT | 132.94 | HC |
| SRR1633185 | panicle | WT | 132.75 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 5.49 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 5.72 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 9.28 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 7.82 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 7.07 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 8.98 | HC |
| SRR5126147 | root | "mock,1_day" | 9.22 | HC |
| SRR5126148 | root | "mock,1_day" | 8.36 | HC |
| SRR5126149 | root | "mock,1_day" | 17.78 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 9.63 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 11.75 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 7.39 | HC |
| SRR5126153 | root | "mock,7_days" | 19.23 | HC |
| SRR5126155 | root | "mock,7_days" | 26.61 | HC |
| SRR5126157 | root | "mock,7_days" | 36.12 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 19.25 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 19.08 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 18.56 | HC |
| SRR5126165 | root | "mock,14_days" | 13.64 | HC |
| SRR5126167 | root | "mock,14_days" | 18.23 | HC |
| SRR5126169 | root | "mock,14_days" | 32.15 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 26.08 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 34.13 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 25.28 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.99 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 3.01 | HC |
| SRR1213694 | root | wt | 5.61 | HC |
| SRR4947480 | root | control | 20.79 | HC |
| SRR4947481 | root | control | 20.89 | HC |
| SRR4947484 | root | Al | 14.34 | HC |
| SRR4947485 | root | Al | 15.11 | HC |
| SRR4947488 | root | control | 18.93 | HC |
| SRR4947489 | root | control | 20.41 | HC |
| SRR4947492 | root | Al | 17.87 | HC |
| SRR4947493 | root | Al | 19.26 | HC |
| SRR4947497 | root | control | 19.02 | HC |
| SRR4947500 | root | Al | 13.76 | HC |
| SRR4947501 | root | Al | 23.36 | HC |
| SRR4947504 | root | control | 23.46 | HC |
| SRR4947505 | root | control | 24.06 | HC |
| SRR4947508 | root | Al | 12.14 | HC |
| SRR4947509 | root | Al | 19.84 | HC |
| SRR6502091 | root | 100 mM NaCl | 19.79 | HC |
| SRR6502092 | root | 100 mM NaCl | 31.95 | HC |
| SRR6502093 | root | 100 mM NaCl | 25.08 | HC |
| SRR6502094 | root | control | 11.28 | HC |
| SRR6502095 | root | control | 12.76 | HC |
| SRR6502096 | root | control | 9.10 | HC |
| SRR6502103 | root | 100 mM NaCl | 14.09 | HC |
| SRR6502104 | root | 100 mM NaCl | 17.09 | HC |
| SRR6502105 | root | 100 mM NaCl | 30.99 | HC |
| SRR6502106 | root | control | 9.17 | HC |
| SRR6502107 | root | control | 6.69 | HC |
| SRR6502108 | root | control | 7.17 | HC |
| SRR1740430 | root_meristematic_zone | wt | 4.97 | HC |
| SRR2154087 | seedling | wt | 4.98 | HC |
| SRR2857719 | seedling | drought_stress_0h | 6.84 | HC |
| SRR2857720 | seedling | drought_stress_1h | 5.71 | HC |
| SRR2857721 | seedling | drought_stress_6h | 5.94 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 5.39 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 9.23 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.31 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 21.02 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 12.40 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.55 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 9.55 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 7.05 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.60 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 7.35 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.88 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 4.08 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.28 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 5.05 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 4.31 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 26.31 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 23.02 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 28.80 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 66.77 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 40.62 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 48.14 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 27.69 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 33.80 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 24.09 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 40.77 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 35.56 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 26.99 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 25.52 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 26.58 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 25.57 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 33.05 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 37.98 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 27.71 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 31.12 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 26.86 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 34.26 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 32.31 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 52.45 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 7.84 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 8.82 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 10.96 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 8.54 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 14.39 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 14.17 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 13.84 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 7.79 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 7.20 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 8.60 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 7.20 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 7.62 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 6.38 | HC |