| SRR358795 | callus | wt | 35.94 | HC |
| SRR358796 | callus | wt | 38.26 | HC |
| SRR358797 | callus | wt | 43.77 | HC |
| SRR358798 | callus | wt | 42.58 | HC |
| SRR5560729 | caryopsis | wild_type | 10.36 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 5.12 | HC |
| SRR4947495 | root | control | 41.53 | HC |
| SRR7265400 | coleoptile | 2dA | 24.35 | HC |
| SRR7265401 | coleoptile | 2dA | 28.78 | HC |
| SRR7265402 | coleoptile | 2dA | 28.26 | HC |
| SRR7265403 | coleoptile | 2dN | 30.97 | HC |
| SRR7265404 | coleoptile | 2dN | 26.50 | HC |
| SRR7265405 | coleoptile | 2dN | 26.43 | HC |
| SRR7265406 | coleoptile | 3dA | 8.28 | HC |
| SRR7265407 | coleoptile | 3dA | 10.02 | HC |
| SRR7265408 | coleoptile | 3dA | 3.63 | HC |
| SRR7265409 | coleoptile | 3dN | 20.56 | HC |
| SRR7265410 | coleoptile | 3dN | 15.94 | HC |
| SRR7265411 | coleoptile | 3dN | 13.46 | HC |
| SRR7265415 | coleoptile | 4dN | 11.83 | HC |
| SRR7265416 | coleoptile | 4dN | 11.49 | HC |
| SRR7265417 | coleoptile | 4dN | 9.34 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 10.62 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 9.80 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 15.12 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 7.57 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 19.87 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 11.85 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 36.91 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 7.70 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 16.57 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 16.42 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 8.04 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 19.80 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 16.49 | HC |
| SRR7265373 | embryo | dry seed 0 h | 6.75 | HC |
| SRR7265374 | embryo | dry seed 0 h | 6.99 | HC |
| SRR7265376 | embryo | 1hA | 4.43 | HC |
| SRR7265377 | embryo | 1hA | 3.98 | HC |
| SRR7265378 | embryo | 1hA | 6.40 | HC |
| SRR7265379 | embryo | 1hN | 5.36 | HC |
| SRR7265380 | embryo | 1hN | 5.66 | HC |
| SRR7265381 | embryo | 1hN | 5.49 | HC |
| SRR7265382 | embryo | 3hA | 6.42 | HC |
| SRR7265383 | embryo | 3hA | 9.52 | HC |
| SRR7265384 | embryo | 3hA | 6.44 | HC |
| SRR7265385 | embryo | 3hN | 5.51 | HC |
| SRR7265386 | embryo | 3hN | 5.02 | HC |
| SRR7265387 | embryo | 3hN | 7.22 | HC |
| SRR7265388 | embryo | 12hA | 65.37 | HC |
| SRR7265389 | embryo | 12hA | 62.14 | HC |
| SRR7265390 | embryo | 12hA | 65.32 | HC |
| SRR7265391 | embryo | 12hN | 41.32 | HC |
| SRR7265392 | embryo | 12hN | 40.83 | HC |
| SRR7265393 | embryo | 12hN | 41.53 | HC |
| SRR7265394 | embryo | 24hA | 44.01 | HC |
| SRR7265395 | embryo | 24hA | 50.76 | HC |
| SRR7265396 | embryo | 24hA | 46.23 | HC |
| SRR7265397 | embryo | 24hN | 37.18 | HC |
| SRR7265398 | embryo | 24hN | 35.34 | HC |
| SRR7265399 | embryo | 24hN | 34.67 | HC |
| SRR1213690 | flower | wt(flower buds) | 8.09 | HC |
| SRR1213691 | flower | wt | 14.48 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.36 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.93 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.50 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.89 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 7.93 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 8.43 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 9.03 | HC |
| SRR6502090 | leaf | control | 5.29 | HC |
| SRR6502100 | leaf | control | 4.97 | HC |
| SRR6502101 | leaf | control | 4.75 | HC |
| SRR5856927 | leaf | control | 4.15 | HC |
| SRR5856928 | leaf | control | 5.15 | HC |
| SRR5856929 | leaf | control | 7.10 | HC |
| SRR5856930 | leaf | salt | 2.55 | HC |
| SRR5856931 | leaf | salt | 2.20 | HC |
| SRR5856932 | leaf | salt | 2.78 | HC |
| SRR5856934 | leaf | control | 2.44 | HC |
| SRR5856935 | leaf | control | 2.68 | HC |
| SRR5856938 | leaf | salt | 2.51 | HC |
| SRR5110429 | panicle | Dawn | 20.96 | HC |
| SRR5110430 | panicle | Dawn | 8.08 | HC |
| SRR5110431 | panicle | Dawn | 26.15 | HC |
| SRR5110432 | panicle | Dawn | 14.25 | HC |
| SRR4947496 | root | control | 41.66 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 32.95 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 12.30 | HC |
| SRR5110437 | panicle | Dawn + 7h | 27.47 | HC |
| SRR5110438 | panicle | Dawn + 7h | 7.51 | HC |
| SRR5110439 | panicle | Dawn + 7h | 22.07 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 30.03 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 15.23 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 29.97 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 7.22 | HC |
| SRR5110445 | panicle | Dusk | 15.20 | HC |
| SRR5110446 | panicle | Dusk | 9.95 | HC |
| SRR5110447 | panicle | Dusk | 40.45 | HC |
| SRR5110448 | panicle | Dusk | 16.76 | HC |
| SRR5110449 | panicle | Dawn + 14h | 21.03 | HC |
| SRR5110450 | panicle | Dawn + 14h | 17.13 | HC |
| SRR5110451 | panicle | Dawn + 14h | 18.74 | HC |
| SRR5110452 | panicle | Dawn + 14h | 6.84 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 26.00 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 12.23 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 9.50 | HC |
| SRR5110457 | panicle | Dawn + 21h | 17.46 | HC |
| SRR5110458 | panicle | Dawn + 21h | 8.66 | HC |
| SRR5110459 | panicle | Dawn + 21h | 21.67 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 6.52 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 12.57 | HC |
| SRR1633182 | panicle | WT | 6.26 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 8.32 | HC |
| SRR5126147 | root | "mock,1_day" | 46.06 | HC |
| SRR5126148 | root | "mock,1_day" | 22.99 | HC |
| SRR5126149 | root | "mock,1_day" | 21.74 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 18.68 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 38.11 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 59.04 | HC |
| SRR5126153 | root | "mock,7_days" | 24.50 | HC |
| SRR5126155 | root | "mock,7_days" | 24.67 | HC |
| SRR5126157 | root | "mock,7_days" | 18.02 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 37.69 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 27.51 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 47.25 | HC |
| SRR5126165 | root | "mock,14_days" | 32.44 | HC |
| SRR5126167 | root | "mock,14_days" | 19.50 | HC |
| SRR5126169 | root | "mock,14_days" | 36.89 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 24.13 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 29.56 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 10.85 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 10.52 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 3.19 | HC |
| SRR1213694 | root | wt | 13.09 | HC |
| SRR4947478 | root | control | 26.39 | HC |
| SRR4947479 | root | control | 38.51 | HC |
| SRR4947480 | root | control | 62.30 | HC |
| SRR4947481 | root | control | 79.52 | HC |
| SRR4947482 | root | Al | 20.77 | HC |
| SRR4947483 | root | Al | 27.87 | HC |
| SRR4947484 | root | Al | 69.45 | HC |
| SRR4947485 | root | Al | 42.91 | HC |
| SRR4947487 | root | control | 25.56 | HC |
| SRR4947488 | root | control | 57.06 | HC |
| SRR4947489 | root | control | 38.53 | HC |
| SRR4947490 | root | Al | 31.36 | HC |
| SRR4947491 | root | Al | 47.89 | HC |
| SRR4947492 | root | Al | 64.68 | HC |
| SRR4947493 | root | Al | 51.71 | HC |
| SRR4947494 | root | control | 32.04 | HC |
| SRR4947497 | root | control | 62.74 | HC |
| SRR4947498 | root | Al | 41.89 | HC |
| SRR4947499 | root | Al | 46.37 | HC |
| SRR4947500 | root | Al | 55.26 | HC |
| SRR4947501 | root | Al | 80.45 | HC |
| SRR4947502 | root | control | 53.83 | HC |
| SRR4947503 | root | control | 30.90 | HC |
| SRR4947504 | root | control | 71.40 | HC |
| SRR4947505 | root | control | 63.63 | HC |
| SRR4947506 | root | Al | 27.01 | HC |
| SRR4947507 | root | Al | 44.47 | HC |
| SRR4947508 | root | Al | 41.42 | HC |
| SRR4947509 | root | Al | 60.01 | HC |
| SRR6502091 | root | 100 mM NaCl | 25.75 | HC |
| SRR6502092 | root | 100 mM NaCl | 32.66 | HC |
| SRR6502093 | root | 100 mM NaCl | 36.97 | HC |
| SRR6502094 | root | control | 25.46 | HC |
| SRR6502095 | root | control | 25.13 | HC |
| SRR6502096 | root | control | 29.91 | HC |
| SRR6502103 | root | 100 mM NaCl | 47.94 | HC |
| SRR6502104 | root | 100 mM NaCl | 40.06 | HC |
| SRR6502105 | root | 100 mM NaCl | 51.16 | HC |
| SRR6502106 | root | control | 30.77 | HC |
| SRR6502107 | root | control | 31.10 | HC |
| SRR6502108 | root | control | 49.24 | HC |
| SRR1740434 | root_differentiation_zone | wt | 22.67 | HC |
| SRR1740435 | root_differentiation_zone | wt | 19.42 | HC |
| SRR1740436 | root_differentiation_zone | wt | 52.49 | HC |
| SRR1740431 | root_elongation_zone | wt | 25.86 | HC |
| SRR1740432 | root_elongation_zone | wt | 48.40 | HC |
| SRR1740433 | root_elongation_zone | wt | 49.08 | HC |
| SRR1740428 | root_meristematic_zone | wt | 40.53 | HC |
| SRR1740429 | root_meristematic_zone | wt | 45.39 | HC |
| SRR1740430 | root_meristematic_zone | wt | 62.73 | HC |
| SRR6441554 | seedling | wild_type | 5.45 | HC |
| SRR2154086 | seedling | wt | 10.19 | HC |
| SRR2154082 | seedling | wt | 3.63 | HC |
| SRR2154083 | seedling | wt | 11.81 | HC |
| SRR2154084 | seedling | wt | 18.06 | HC |
| SRR2154085 | seedling | wt | 5.08 | HC |
| SRR2154087 | seedling | wt | 5.46 | HC |
| SRR2857719 | seedling | drought_stress_0h | 4.44 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.32 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 14.82 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 13.11 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 8.71 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 9.10 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 9.28 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 10.45 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 8.61 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 9.85 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 9.56 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 10.60 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 20.89 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 25.55 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 8.90 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 8.40 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 18.12 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 14.96 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 18.46 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 27.02 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 17.92 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 12.84 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 17.45 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 19.80 | HC |