RiceNCexp:Browse

phasiRNAs Basic Information

We used the phasiRNA analysis tool PhasiRNAnalyzer to predict the phasiRNA of 307 rice samples (including different tissues and treatments), and integrated the prediction results of the 355 samples to obtain the mature phasiRNAs.

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total numbers: 9239

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Name	PHAS gene	Strand on PHAS gene	Start on PHAS gene	Gene	Chromosome	Strand	Annotation	DE/TSE
Osa-phasi01g0500	XR_003242912.1	+	717	LOC112939311	Chr1	-	uncharacterized LOC112939311	N/N
Osa-phasi01g0501	XR_003242912.1	-	736	LOC112939311	Chr1	-	uncharacterized LOC112939311	N/N
Osa-phasi01g0502	XR_003242912.1	-	757	LOC112939311	Chr1	-	uncharacterized LOC112939311	N/Y
Osa-phasi01g0503	XR_003242912.1	+	885	LOC112939311	Chr1	-	uncharacterized LOC112939311	N/N
Osa-phasi01g0504	XR_003242912.1	+	906	LOC112939311	Chr1	-	uncharacterized LOC112939311	N/N
Osa-phasi01g0505	XR_003242912.1	-	946	LOC112939311	Chr1	-	uncharacterized LOC112939311	N/N
Osa-phasi01g0506	XR_003242912.1	+	969	LOC112939311	Chr1	-	uncharacterized LOC112939311	N/N
Osa-phasi01g0507	XR_003242912.1	+	990	LOC112939311	Chr1	-	uncharacterized LOC112939311	N/N
Osa-phasi01g0508	XR_003242912.1	+	1032	LOC112939311	Chr1	-	uncharacterized LOC112939311	N/N
Osa-phasi01g0509	XR_003242942.1	-	1790	LOC9270848	Chr1	+	uncharacterized LOC9270848	N/N
Osa-phasi01g0510	XR_003242942.1	+	1792	LOC9270848	Chr1	+	uncharacterized LOC9270848	N/N
Osa-phasi01g0511	XR_003242942.1	+	1834	LOC9270848	Chr1	+	uncharacterized LOC9270848	N/N
Osa-phasi01g0512	XR_003242942.1	+	1855	LOC9270848	Chr1	+	uncharacterized LOC9270848	N/N
Osa-phasi01g0513	XM_015765691.2	-	365	LOC4326349	Chr1	-	uncharacterized LOC4326349, transcript variant X3	N/N
Osa-phasi01g0514	XM_015765691.2	+	367	LOC4326349	Chr1	-	uncharacterized LOC4326349, transcript variant X3	N/N
Osa-phasi01g0515	XM_015765691.2	-	386	LOC4326349	Chr1	-	uncharacterized LOC4326349, transcript variant X3	N/N
Osa-phasi01g0516	XM_015765691.2	-	449	LOC4326349	Chr1	-	uncharacterized LOC4326349, transcript variant X3	N/N
Osa-phasi01g0517	XM_015766136.2	+	301	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0518	XM_015766136.2	-	320	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0519	XM_015766136.2	+	322	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0520	XM_015766136.2	+	343	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0521	XM_015766136.2	+	427	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0522	XM_015766136.2	+	448	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0523	XM_015766136.2	-	509	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0524	XM_015766136.2	+	511	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0525	XM_015766136.2	+	532	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0526	XM_015766136.2	-	593	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0527	XM_015766136.2	-	614	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0528	XM_015766136.2	-	635	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0529	XM_015766136.2	-	656	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/Y
Osa-phasi01g0530	XM_015766136.2	+	658	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0531	XM_015766136.2	+	679	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0532	XM_015766136.2	+	721	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0533	XM_015766136.2	-	845	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0534	XM_015766136.2	+	847	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0535	XM_015766136.2	-	866	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0536	XM_015766136.2	-	887	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0537	XM_015766136.2	+	889	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0538	XM_015766136.2	-	908	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0539	XM_015766136.2	-	929	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0540	XM_015766136.2	-	950	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0541	XM_015766136.2	-	971	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0542	XM_015766136.2	-	992	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0543	XM_015766136.2	+	1015	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0544	XM_015766136.2	+	1057	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0545	XM_015766136.2	-	1230	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0546	XM_015766136.2	-	1251	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0547	XM_015766136.2	-	1272	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0548	XM_015766136.2	-	1314	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N
Osa-phasi01g0549	XM_015766136.2	-	1356	LOC4324193	Chr1	-	uncharacterized LOC4324193, transcript variant X1	N/N