Index

B

base() (mlqtl.data.plink.Plink method) (mlqtl.data.snp.Plink method)

C

cal_padj() (in module mlqtl.datautils) cal_sliding_window() (in module mlqtl.datautils) check_chrom() (mlqtl.data.dataset.Dataset method)

chrom (mlqtl.data.gene.Gene property) (mlqtl.data.snp.SNP property) chunks() (mlqtl.data.gene.Gene method) convert_onehot() (mlqtl.data.snp.SNP static method)

D

Dataset (class in mlqtl.data.dataset)

duplicated_markers (mlqtl.data.plink.Plink property) (mlqtl.data.snp.Plink property)

E

encode() (mlqtl.data.snp.SNP method)

F

feature_importance() (in module mlqtl.train) filter() (mlqtl.data.gene.Gene method)

filter_by_chr() (mlqtl.data.gene.Gene method) filter_df() (mlqtl.data.trait.Trait method)

G

Gene (class in mlqtl.data.gene) get() (mlqtl.data.dataset.Dataset method) (mlqtl.data.gene.Gene method) (mlqtl.data.snp.SNP method) (mlqtl.data.trait.Trait method)

get_class_from_path() (in module mlqtl.utils) get_hap() (mlqtl.data.dataset.Dataset method) gff3_to_range() (in module mlqtl.utils) gtf_to_range() (in module mlqtl.utils)

I

idx2marker() (mlqtl.data.plink.Plink method) (mlqtl.data.snp.Plink method)

init_worker() (in module mlqtl.train)

M

marker2idx() (mlqtl.data.plink.Plink method) (mlqtl.data.snp.Plink method) MatrixFloat64 (in module mlqtl.nda_typing) MatrixInt8 (in module mlqtl.nda_typing) merge_window() (in module mlqtl.datautils) MLMetrics (class in mlqtl.train) mlqtl module mlqtl.cli module mlqtl.data module mlqtl.data.dataset module mlqtl.data.gene module mlqtl.data.plink module mlqtl.data.snp module mlqtl.data.trait module mlqtl.datautils module

mlqtl.nda_typing module mlqtl.plot module mlqtl.train module mlqtl.utils module module mlqtl mlqtl.cli mlqtl.data mlqtl.data.dataset mlqtl.data.gene mlqtl.data.plink mlqtl.data.snp mlqtl.data.trait mlqtl.datautils mlqtl.nda_typing mlqtl.plot mlqtl.train mlqtl.utils

N

nb_markers (mlqtl.data.plink.Plink property) (mlqtl.data.snp.Plink property) nb_samples (mlqtl.data.plink.Plink property) (mlqtl.data.snp.Plink property)

next() (mlqtl.data.plink.Plink method) (mlqtl.data.snp.Plink method)

P

Plink (class in mlqtl.data.plink) (class in mlqtl.data.snp)

plot_feature_importance() (in module mlqtl.plot) plot_graph() (in module mlqtl.plot) proc_train_res() (in module mlqtl.datautils)

R

run_plink() (in module mlqtl.utils)

S

samples (mlqtl.data.snp.SNP property) significance() (in module mlqtl.datautils)

skip_padj() (in module mlqtl.datautils) sliding_window() (in module mlqtl.datautils) SNP (class in mlqtl.data.snp)

T

TensorFloat64 (in module mlqtl.nda_typing) train() (in module mlqtl.train) train_batch() (in module mlqtl.train)

train_single() (in module mlqtl.train) train_with_progressbar() (in module mlqtl.train) Trait (class in mlqtl.data.trait)

U

update() (mlqtl.train.MLMetrics method)

V

VectorBool (in module mlqtl.nda_typing) VectorFloat64 (in module mlqtl.nda_typing)

VectorInt8 (in module mlqtl.nda_typing) VectorStr (in module mlqtl.nda_typing)