RTFRD: Rice Transcription Factor Regulation Database

Explanation of Motif Confidence

The number of stars to represent the confidence level of TF binding motif.

	A set of manually curated, non-redundancy and high-quality TF binding Motifs downloaded from PlantTFDB
	In the same family, the TFs with high TF sequence similarity(e-value < 1e-10) to the three stars use the same motif
	In the same family, the TFs with high TF sequence similarity(e-value > 1e-10 or e-value < 1e-4) to the three stars use the same motif
blank	No TF binding Motifs (e-value > 1e-4)

TF id	TF annotation	Gene id	Family
LOC_Os01g01290.1	histone-like transcription factor and archaeal histone, putative, expressed	LOC_Os01g01290	NF-YC
LOC_Os01g08790.1	histone-like transcription factor and archaeal histone, putative, expressed	LOC_Os01g08790	NF-YC
LOC_Os01g24460.1	histone-like transcription factor and archaeal histone, putative, expressed	LOC_Os01g24460	NF-YC
LOC_Os01g39850.1	histone-like transcription factor and archaeal histone, putative, expressed	LOC_Os01g39850	NF-YC
LOC_Os02g07450.1	core histone H2A/H2B/H3/H4, putative, expressed	LOC_Os02g07450	NF-YC
LOC_Os02g07450.2	core histone H2A/H2B/H3/H4, putative, expressed	LOC_Os02g07450	NF-YC
LOC_Os03g14669.1	core histone H2A/H2B/H3/H4, putative, expressed	LOC_Os03g14669	NF-YC
LOC_Os03g14669.2	core histone H2A/H2B/H3/H4, putative, expressed	LOC_Os03g14669	NF-YC
LOC_Os03g63530.2	histone-like transcription factor and archaeal histone, putative, expressed	LOC_Os03g63530	NF-YC
LOC_Os03g63530.1	histone-like transcription factor and archaeal histone, putative, expressed	LOC_Os03g63530	NF-YC
LOC_Os04g58680.1	core histone H2A/H2B/H3/H4, putative, expressed	LOC_Os04g58680	NF-YC
LOC_Os05g23910.1	histone-like transcription factor and archaeal histone, putative, expressed	LOC_Os05g23910	NF-YC
LOC_Os05g41450.1	histone-like transcription factor and archaeal histone, putative, expressed	LOC_Os05g41450	NF-YC
LOC_Os06g45640.1	core histone H2A/H2B/H3/H4, putative, expressed	LOC_Os06g45640	NF-YC
LOC_Os08g10560.1	histone-like transcription factor and archaeal histone family protein, expressed	LOC_Os08g10560	NF-YC
LOC_Os08g38780.1	core histone H2A/H2B/H3/H4, putative, expressed	LOC_Os08g38780	NF-YC
LOC_Os09g30310.1	core histone H2A/H2B/H3/H4, putative, expressed	LOC_Os09g30310	NF-YC
LOC_Os10g11580.1	histone-like transcription factor and archaeal histone, putative, expressed	LOC_Os10g11580	NF-YC
LOC_Os11g34200.1	histone-like transcription factor and archaeal histone, putative, expressed	LOC_Os11g34200	NF-YC

TF id

TF annotation

Motif Confidence

Gene id

Family

Detail

LOC_Os01g01290.1

histone-like transcription factor and archaeal histone, putative, expressed

LOC_Os01g01290

NF-YC

LOC_Os01g08790.1

histone-like transcription factor and archaeal histone, putative, expressed

LOC_Os01g08790

NF-YC

LOC_Os01g24460.1

histone-like transcription factor and archaeal histone, putative, expressed

LOC_Os01g24460

NF-YC

LOC_Os01g39850.1

histone-like transcription factor and archaeal histone, putative, expressed

LOC_Os01g39850

NF-YC

LOC_Os02g07450.1

core histone H2A/H2B/H3/H4, putative, expressed

LOC_Os02g07450

NF-YC

LOC_Os02g07450.2

core histone H2A/H2B/H3/H4, putative, expressed

LOC_Os02g07450

NF-YC

LOC_Os03g14669.1

core histone H2A/H2B/H3/H4, putative, expressed

LOC_Os03g14669

NF-YC

LOC_Os03g14669.2

core histone H2A/H2B/H3/H4, putative, expressed

LOC_Os03g14669

NF-YC

LOC_Os03g63530.2

histone-like transcription factor and archaeal histone, putative, expressed

LOC_Os03g63530

NF-YC

LOC_Os03g63530.1

histone-like transcription factor and archaeal histone, putative, expressed

LOC_Os03g63530

NF-YC

LOC_Os04g58680.1

core histone H2A/H2B/H3/H4, putative, expressed

LOC_Os04g58680

NF-YC

LOC_Os05g23910.1

histone-like transcription factor and archaeal histone, putative, expressed

LOC_Os05g23910

NF-YC

LOC_Os05g41450.1

histone-like transcription factor and archaeal histone, putative, expressed

LOC_Os05g41450

NF-YC

LOC_Os06g45640.1

core histone H2A/H2B/H3/H4, putative, expressed

LOC_Os06g45640

NF-YC

LOC_Os08g10560.1

histone-like transcription factor and archaeal histone family protein, expressed

LOC_Os08g10560

NF-YC

LOC_Os08g38780.1

core histone H2A/H2B/H3/H4, putative, expressed

LOC_Os08g38780

NF-YC

LOC_Os09g30310.1

core histone H2A/H2B/H3/H4, putative, expressed

LOC_Os09g30310

NF-YC

LOC_Os10g11580.1

histone-like transcription factor and archaeal histone, putative, expressed

LOC_Os10g11580

NF-YC

LOC_Os11g34200.1

histone-like transcription factor and archaeal histone, putative, expressed

LOC_Os11g34200

NF-YC

NF-YC Family Information