RTFRD: Rice Transcription Factor Regulation Database


M-type_MADS Family Information


Explanation of Motif Confidence

The number of stars to represent the confidence level of TF binding motif.

A set of manually curated, non-redundancy and high-quality TF binding Motifs downloaded from PlantTFDB
In the same family, the TFs with high TF sequence similarity(e-value < 1e-10) to the three stars use the same motif
In the same family, the TFs with high TF sequence similarity(e-value > 1e-10 or e-value < 1e-4) to the three stars use the same motif
blankNo TF binding Motifs (e-value > 1e-4)
TF id TF annotation Motif Confidence Gene id Family Detail
LOC_Os01g11510.1OsMADS91 - MADS-box family gene with M-beta type-box, expressedLOC_Os01g11510M-type_MADS
LOC_Os01g18420.1OsMADS88 - MADS-box family gene with M-gamma type-box, expressedLOC_Os01g18420M-type_MADS
LOC_Os01g18440.1OsMADS89 - MADS-box family gene with M-gamma type-box, expressedLOC_Os01g18440M-type_MADS
LOC_Os01g23750.1OsMADS92 - MADS-box family gene with M-beta type-box, expressedLOC_Os01g23750M-type_MADS
LOC_Os01g23760.1OsMADS93 - MADS-box family gene with M-beta type-box, expressedLOC_Os01g23760M-type_MADS
LOC_Os01g23770.1OsMADS94 - MADS-box family gene with M-beta type-box, expressedLOC_Os01g23770M-type_MADS
LOC_Os01g23780.1OsMADS95 - MADS-box family gene with M-beta type-box, expressedLOC_Os01g23780M-type_MADS
LOC_Os01g67890.1OsMADS96 - MADS-box family gene with M-beta type-box, expressedLOC_Os01g67890M-type_MADS
LOC_Os01g68560.1OsMADS98 - MADS-box family gene with M-beta type-box, expressedLOC_Os01g68560M-type_MADS
LOC_Os01g69850.1OsMADS65 - MADS-box family gene with MIKC* type-box, expressedLOC_Os01g69850M-type_MADS
LOC_Os01g74440.1OsMADS79 - MADS-box family gene with M-alpha type-box, expressedLOC_Os01g74440M-type_MADS
LOC_Os02g06860.1OsMADS80 - MADS-box family gene with M-alpha type-box, expressedLOC_Os02g06860M-type_MADS
LOC_Os02g49840.3OsMADS57 - MADS-box family gene with MIKCc type-box, expressedLOC_Os02g49840M-type_MADS
LOC_Os03g03100.1OsMADS50 - MADS-box family gene with MIKCc type-box, expressedLOC_Os03g03100M-type_MADS
LOC_Os03g14850.1OsMADS72 - MADS-box family gene with M-alpha type-box, expressedLOC_Os03g14850M-type_MADS
LOC_Os03g37670.1OsMADS86 - MADS-box family gene with M-gamma type-box, expressedLOC_Os03g37670M-type_MADS
LOC_Os03g38610.1OsMADS87 - MADS-box family gene with M-gamma type-box, expressedLOC_Os03g38610M-type_MADS
LOC_Os04g25870.1OsMADS84 - MADS-box family gene with M-gamma type-box, expressedLOC_Os04g25870M-type_MADS
LOC_Os04g31804.1OsMADS64 - MADS-box family gene with M-alpha type-box, expressedLOC_Os04g31804M-type_MADS
LOC_Os04g38770.1OsMADS61 - MADS-box family gene with MIKCc type-box, expressedLOC_Os04g38770M-type_MADS
LOC_Os05g11380.2OsMADS66 - MADS-box family gene with MIKCc type-box, expressedLOC_Os05g11380M-type_MADS
LOC_Os05g23780.1OsMADS70 - MADS-box family gene with M-alpha type-box, expressedLOC_Os05g23780M-type_MADS
LOC_Os06g11970.1OsMADS63 - MADS-box family gene with MIKC* type-box, expressedLOC_Os06g11970M-type_MADS
LOC_Os06g22760.1OsMADS71 - MADS-box family gene with M-alpha type-box, expressedLOC_Os06g22760M-type_MADS
LOC_Os06g23950.1OsMADS59 - MADS-box family gene with MIKCc type-boxLOC_Os06g23950M-type_MADS
LOC_Os06g30810.1OsMADS75 - MADS-box family gene with M-alpha type-box, expressedLOC_Os06g30810M-type_MADS
LOC_Os06g30830.1OsMADS76 - MADS-box family gene with M-alpha type-box, expressedLOC_Os06g30830M-type_MADS
LOC_Os07g04170.1OsMADS90 - MADS-box family gene with M-beta type-box, expressedLOC_Os07g04170M-type_MADS
LOC_Os08g38590.1OsMADS62 - MADS-box family gene with MIKC* type-box, expressedLOC_Os08g38590M-type_MADS
LOC_Os09g02780.1OsMADS77 - MADS-box family gene with M-alpha type-box, expressedLOC_Os09g02780M-type_MADS
LOC_Os09g02830.1OsMADS78 - MADS-box family gene with M-alpha type-box, expressedLOC_Os09g02830M-type_MADS
LOC_Os11g12360.1transposon protein, putative, CACTA, En/Spm sub-class, expressedLOC_Os11g12360M-type_MADS
LOC_Os11g43740.1OsMADS68 - MADS-box family gene with MIKC* type-box, expressedLOC_Os11g43740M-type_MADS
LOC_Os12g21850.1OsMADS73 - MADS-box family gene with M-alpha type-box, expressedLOC_Os12g21850M-type_MADS
LOC_Os12g21880.1OsMADS74 - MADS-box family gene with M-alpha type-box, expressedLOC_Os12g21880M-type_MADS