RTFRD: Rice Transcription Factor Regulation Database


GRAS Family Information


Explanation of Motif Confidence

The number of stars to represent the confidence level of TF binding motif.

A set of manually curated, non-redundancy and high-quality TF binding Motifs downloaded from PlantTFDB
In the same family, the TFs with high TF sequence similarity(e-value < 1e-10) to the three stars use the same motif
In the same family, the TFs with high TF sequence similarity(e-value > 1e-10 or e-value < 1e-4) to the three stars use the same motif
blankNo TF binding Motifs (e-value > 1e-4)
TF id TF annotation Motif Confidence Gene id Family Detail
LOC_Os01g45860.1GRAS family transcription factor domain containing protein, expressedLOC_Os01g45860GRAS
LOC_Os01g62460.2ZOS1-16 - C2H2 zinc finger protein, expressedLOC_Os01g62460GRAS
LOC_Os01g62460.1ZOS1-16 - C2H2 zinc finger protein, expressedLOC_Os01g62460GRAS
LOC_Os01g62460.3ZOS1-16 - C2H2 zinc finger protein, expressedLOC_Os01g62460GRAS
LOC_Os01g65900.1chitin-inducible gibberellin-responsive protein, putative, expressedLOC_Os01g65900GRAS
LOC_Os01g67650.1gibberellin response modulator protein, putative, expressedLOC_Os01g67650GRAS
LOC_Os01g67670.1gibberellin response modulator protein, putative, expressedLOC_Os01g67670GRAS
LOC_Os01g71970.1GRAS family transcription factor containing protein, expressedLOC_Os01g71970GRAS
LOC_Os02g10360.1MONOCULM 1, putative, expressedLOC_Os02g10360GRAS
LOC_Os02g21685.1expressed proteinLOC_Os02g21685GRAS
LOC_Os02g44360.1scarecrow transcription factor family protein, putative, expressedLOC_Os02g44360GRAS
LOC_Os02g44370.1scarecrow, putative, expressedLOC_Os02g44370GRAS
LOC_Os02g45760.1chitin-inducible gibberellin-responsive protein 2, putative, expressedLOC_Os02g45760GRAS
LOC_Os03g09280.2gibberellin response modulator protein, putative, expressedLOC_Os03g09280GRAS
LOC_Os03g09280.3gibberellin response modulator protein, putative, expressedLOC_Os03g09280GRAS
LOC_Os03g09280.1gibberellin response modulator protein, putative, expressedLOC_Os03g09280GRAS
LOC_Os03g15680.1nodulation-signaling pathway 2 protein, putative, expressedLOC_Os03g15680GRAS
LOC_Os03g29480.1nodulation-signaling pathway 1 protein, putative, expressedLOC_Os03g29480GRAS
LOC_Os03g31880.1SHORT-ROOT, putative, expressedLOC_Os03g31880GRAS
LOC_Os03g37900.1scarecrow transcription factor family protein, putativeLOC_Os03g37900GRAS
LOC_Os03g40080.1GRAS family transcription factor containing protein, expressedLOC_Os03g40080GRAS
LOC_Os03g48450.2SCARECROW, putative, expressedLOC_Os03g48450GRAS
LOC_Os03g48450.3SCARECROW, putative, expressedLOC_Os03g48450GRAS
LOC_Os03g48450.1SCARECROW, putative, expressedLOC_Os03g48450GRAS
LOC_Os03g48450.4SCARECROW, putative, expressedLOC_Os03g48450GRAS
LOC_Os03g49990.1GRAS family transcription factor domain containing protein, expressedLOC_Os03g49990GRAS
LOC_Os03g51330.1GRAS family transcription factor domain containing protein, expressedLOC_Os03g51330GRAS
LOC_Os04g35250.1MONOCULM 1, putative, expressedLOC_Os04g35250GRAS
LOC_Os04g37440.1expressed proteinLOC_Os04g37440GRAS
LOC_Os04g46860.1scarecrow, putative, expressedLOC_Os04g46860GRAS
LOC_Os04g49110.1GRAS family transcription factor domain containing protein, expressedLOC_Os04g49110GRAS
LOC_Os04g50060.2GRAS family transcription factor domain containing protein, expressedLOC_Os04g50060GRAS
LOC_Os04g50060.1GRAS family transcription factor domain containing protein, expressedLOC_Os04g50060GRAS
LOC_Os05g31380.1GRAS family transcription factor containing protein, expressedLOC_Os05g31380GRAS
LOC_Os05g31420.1GRAS family transcription factor containing protein, expressedLOC_Os05g31420GRAS
LOC_Os05g40710.1DELLA protein GAI, putative, expressedLOC_Os05g40710GRAS
LOC_Os05g42130.1MONOCULM 1, putative, expressedLOC_Os05g42130GRAS
LOC_Os05g49930.1GRAS family transcription factor domain containing protein, expressedLOC_Os05g49930GRAS
LOC_Os06g01620.1scarecrow, putative, expressedLOC_Os06g01620GRAS
LOC_Os06g03710.1DELLA protein SLR1, putative, expressedLOC_Os06g03710GRAS
LOC_Os06g10900.1DELLA protein RGL3, putative, expressedLOC_Os06g10900GRAS
LOC_Os06g40780.1MONOCULM 1, putative, expressedLOC_Os06g40780GRAS
LOC_Os07g16330.1expressed proteinLOC_Os07g16330GRAS
LOC_Os07g36170.1chitin-inducible gibberellin-responsive protein, putative, expressedLOC_Os07g36170GRAS
LOC_Os07g36170.2chitin-inducible gibberellin-responsive protein, putative, expressedLOC_Os07g36170GRAS
LOC_Os07g38030.1GRAS family transcription factor domain containing protein, expressedLOC_Os07g38030GRAS
LOC_Os07g39470.1gibberellin response modulator protein, putative, expressedLOC_Os07g39470GRAS
LOC_Os07g39820.1SHR, putative, expressedLOC_Os07g39820GRAS
LOC_Os07g40020.1GRAS family transcription factor domain containing protein, expressedLOC_Os07g40020GRAS
LOC_Os10g22430.1gibberellin response modulator protein, putative, expressedLOC_Os10g22430GRAS
LOC_Os10g40390.1scarecrow, putative, expressedLOC_Os10g40390GRAS
LOC_Os11g03110.1GRAS family transcription factor domain containing protein, expressedLOC_Os11g03110GRAS
LOC_Os11g04400.1GRAS family transcription factor containing protein, expressedLOC_Os11g04400GRAS
LOC_Os11g04570.1GRAS family transcription factor containing protein, expressedLOC_Os11g04570GRAS
LOC_Os11g04590.1GRAS family transcription factor containing protein, expressedLOC_Os11g04590GRAS
LOC_Os11g06180.1nodulation-signaling pathway 2 protein, putative, expressedLOC_Os11g06180GRAS
LOC_Os11g11600.1expressed proteinLOC_Os11g11600GRAS
LOC_Os11g31100.1gibberellin response modulator protein, putative, expressedLOC_Os11g31100GRAS
LOC_Os11g47870.1GRAS family transcription factor domain containing protein, expressedLOC_Os11g47870GRAS
LOC_Os11g47890.1GRAS family transcription factor domain containing protein, expressedLOC_Os11g47890GRAS
LOC_Os11g47900.1SCARECROW, putative, expressedLOC_Os11g47900GRAS
LOC_Os11g47910.1SCARECROW, putative, expressedLOC_Os11g47910GRAS
LOC_Os11g47920.1SCARECROW, putative, expressedLOC_Os11g47920GRAS
LOC_Os12g02870.1GRAS family transcription factor domain containing protein, expressedLOC_Os12g02870GRAS
LOC_Os12g04200.1GRAS family transcription factor containing protein, expressedLOC_Os12g04200GRAS
LOC_Os12g04370.1GRAS family transcription factor containing protein, expressedLOC_Os12g04370GRAS
LOC_Os12g04380.1GRAS family transcription factor containing protein, expressedLOC_Os12g04380GRAS
LOC_Os12g06540.1GRAS family transcription factor containing protein, expressedLOC_Os12g06540GRAS
LOC_Os12g38490.1SCARECROW, putative, expressedLOC_Os12g38490GRAS