phasiRBase: Plant Phased siRNA Regulation pathway Database

Crop Bioinformatics Group, Nanjing Agricultural University

Introduction

PhasiRNAs play important role in various biological processes, such as plant immunity, stress resistance and development. We construct a phasiRNA regulatory pathway database based on data which generating by strict analysis pipline from phasiHunter. PhasiRBase currently stores 209 degradome verified phase initiator, 7749 PHAS Loci, 103964 phasiRNAs and 61073 degradome verified phasiRNA target gene from 8 species.

Browse

Select the species of interest from the polygenetic tree or the drop-down box to browse.

Search

Search phasiRNAs-related information by PHAS gene ID, PhasiRNA ID, NCBI Gene Locus, NCBI transcript number, or the range of the genome.

Blast

Blast your sequence against our annotated PHAS Loci or phasiRNAs PHAS loci.

Information Statistics

8

Species

209

phase-initiator

7749

PHAS Loci

103964

phasiRNAs

61073

phasiRNA target

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